Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12k15
         (882 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    25   0.70 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    25   0.70 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   2.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.8  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   6.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.5  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   8.6  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 347 FYRIYLLSPSLGPLRFCSAPIPLK 418
           FY I    P +GPLRF   P+P++
Sbjct: 62  FYGIPFAKPPIGPLRF-RKPLPIE 84


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 347 FYRIYLLSPSLGPLRFCSAPIPLK 418
           FY I    P +GPLRF   P+P++
Sbjct: 62  FYGIPFAKPPIGPLRF-RKPLPIE 84


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/41 (21%), Positives = 19/41 (46%)
 Frame = -2

Query: 155 EQKPKDADGQPKVDKVENVPAPDETYGPKIPDNFKPNLASQ 33
           +Q+ +    QP+  + +      +  GP   D+F PN+  +
Sbjct: 831 QQQQQQQQQQPQQQQQQQQQQQQQQRGPMTNDDFNPNIEEE 871


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -2

Query: 413 KESEQNKNEGVQVTETINKFDKIDLYKSIFLSDSEDEDVGQTKNNDR 273
           + +E++  + V+  ET ++FD I +     LS S   D G   ++DR
Sbjct: 161 QNAEEDIVDPVEENETYDEFDTIRIPIVRSLSKSPPNDEGIETDSDR 207


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 6/56 (10%)
 Frame = +1

Query: 367 VSVTWTPS-FLFCSDSFKNNSATVILLGAPTSSV-----LFDVDVTETGLVSILTG 516
           + VT  P  FL+ S +       +  L  P   +      FD+     GLVSI+ G
Sbjct: 71  IFVTSEPGYFLYTSKNDNEEVCGIYFLAEPDQKIEINFITFDIPCEHRGLVSIIDG 126


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/25 (28%), Positives = 17/25 (68%)
 Frame = +1

Query: 418 NNSATVILLGAPTSSVLFDVDVTET 492
           + +AT++L G P++ +   VD+ ++
Sbjct: 847 STAATLVLSGCPSNMMELQVDIADS 871


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +1

Query: 406 DSFKNNSATVILLGAPTSSVLFDVDVTETGLVSILTGSRFSDFDPL--NATCSFAKLSLS 579
           DSF  +  TV+  G  + + +    + +T L  +     +  +  +  NA C++AK   +
Sbjct: 285 DSFAGSDVTVLGWGHTSFNGMLSHILQKTTLNMLTQVECYKYYGNIMVNAMCAYAKGKDA 344

Query: 580 CTEDS 594
           C  DS
Sbjct: 345 CQMDS 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 252,734
Number of Sequences: 438
Number of extensions: 5894
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)