Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12k12
(817 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0732 - 26740718-26741704,26741876-26742478 31 1.4
10_02_0149 - 5873273-5874514,5874826-5875731,5875903-5876505 31 1.4
06_01_1011 + 7879283-7879885,7880057-7880962,7881274-7882515 31 1.4
01_01_0216 + 1843413-1843509,1844583-1844694,1844841-1844908,184... 31 1.4
12_02_0507 + 19810446-19811048,19811220-19811466,19811590-198121... 29 3.3
12_01_1048 + 10770461-10770612,10770721-10770730,10771457-107716... 29 3.3
04_03_0101 - 11242252-11243295,11243607-11244131,11244208-112445... 29 3.3
11_06_0249 + 21697863-21697923,21698119-21698128,21698160-216987... 29 4.4
08_01_0973 + 9803917-9804519,9804691-9805596,9805908-9807149 29 4.4
06_03_0228 - 18439659-18440900,18441212-18441736,18441813-184421... 29 4.4
05_01_0180 + 1268129-1268237,1268382-1268731,1268903-1269808,127... 29 4.4
04_03_0328 + 14440877-14441479,14441650-14441955,14442032-14442637 29 5.8
07_03_0457 - 18404577-18405193,18405317-18405563,18405734-184059... 28 7.7
04_03_0383 + 15179587-15180162,15180334-15181149,15181548-15182789 28 7.7
>11_06_0732 - 26740718-26741704,26741876-26742478
Length = 529
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/77 (23%), Positives = 37/77 (48%)
Frame = -2
Query: 474 EDEDEVIFSNQARVSNERQQSRQTNNSSINNEPLASNAQEDDGTDVVVFKSNKNAKEIID 295
EDEDE +A + E + + N P+++N+++ + V ++ K+
Sbjct: 367 EDEDEEEGEEEAGDAGEAARGERAVGDGYENSPMSNNSRKRGSSSCDVSTASSPGKKSKS 426
Query: 294 PVIQHRENINQARFSSD 244
PV+Q + + + F+SD
Sbjct: 427 PVVQLMKGLLNS-FNSD 442
>10_02_0149 - 5873273-5874514,5874826-5875731,5875903-5876505
Length = 916
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/77 (23%), Positives = 37/77 (48%)
Frame = -2
Query: 474 EDEDEVIFSNQARVSNERQQSRQTNNSSINNEPLASNAQEDDGTDVVVFKSNKNAKEIID 295
EDEDE +A + E + + N P+++N+++ + V ++ K+
Sbjct: 367 EDEDEEEGEEEAGDAGEAARGERAVGDGYENSPMSNNSRKRGSSSCDVSTASSPGKKSKS 426
Query: 294 PVIQHRENINQARFSSD 244
PV+Q + + + F+SD
Sbjct: 427 PVVQLMKGLLNS-FNSD 442
>06_01_1011 + 7879283-7879885,7880057-7880962,7881274-7882515
Length = 916
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/77 (23%), Positives = 37/77 (48%)
Frame = -2
Query: 474 EDEDEVIFSNQARVSNERQQSRQTNNSSINNEPLASNAQEDDGTDVVVFKSNKNAKEIID 295
EDEDE +A + E + + N P+++N+++ + V ++ K+
Sbjct: 367 EDEDEEEGEEEAGDAGEAARGERAVGDGYENSPMSNNSRKRGSSSCDVSTASSPGKKSKS 426
Query: 294 PVIQHRENINQARFSSD 244
PV+Q + + + F+SD
Sbjct: 427 PVVQLMKGLLNS-FNSD 442
>01_01_0216 +
1843413-1843509,1844583-1844694,1844841-1844908,
1845165-1845297,1845404-1845503,1845562-1845722,
1846095-1846188,1846273-1846426,1846597-1846743,
1846819-1846892,1846985-1847073,1847161-1847275,
1847569-1847751
Length = 508
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = -2
Query: 642 IPILVGYLCTVYTGDVVVMIYGAIVMQNCLFLASYTRPIYIEKVIRHTYNM 490
IP+ VG + DV MI G ++ + ++S P+YI +V+ H +
Sbjct: 128 IPLAVGAFLSATAHDVRTMIIGRLLAGIGIGISSALVPLYISEVLEHAQQL 178
>12_02_0507 +
19810446-19811048,19811220-19811466,19811590-19812125,
19812397-19813620
Length = 869
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/77 (22%), Positives = 37/77 (48%)
Frame = -2
Query: 474 EDEDEVIFSNQARVSNERQQSRQTNNSSINNEPLASNAQEDDGTDVVVFKSNKNAKEIID 295
EDEDE +A + E + + N P+++N+++ + V ++ K+
Sbjct: 326 EDEDEEEGEEEAGDAGEAARGERAVGDGYENSPMSTNSRKRGSSSCDVSTASSPGKKSKS 385
Query: 294 PVIQHRENINQARFSSD 244
PV++ + + + F+SD
Sbjct: 386 PVVKLMQGLLNS-FNSD 401
>12_01_1048 +
10770461-10770612,10770721-10770730,10771457-10771624,
10771668-10772017,10772107-10772508,10772940-10773318,
10773801-10774046
Length = 568
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = -1
Query: 742 GSANRGHHNTLLQGKTDHGSEDSPDGSFSRKLLDTNTSRLSL-HGIHWRRCSHDLRCYCD 566
G ++ HNT+ +G H + SP+ S K + +++SL + I+W +H
Sbjct: 475 GESSSLGHNTITEGNNRHTNVLSPELVTSLKRTNERVAQISLTNSIYWN--AHTFALTDS 532
Query: 565 AKLSVFG 545
KL FG
Sbjct: 533 GKLYAFG 539
>04_03_0101 -
11242252-11243295,11243607-11244131,11244208-11244513,
11244692-11245231
Length = 804
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/77 (22%), Positives = 37/77 (48%)
Frame = -2
Query: 474 EDEDEVIFSNQARVSNERQQSRQTNNSSINNEPLASNAQEDDGTDVVVFKSNKNAKEIID 295
EDEDE +A + E + + N P+++N+++ + V ++ K+
Sbjct: 321 EDEDEEEGEEEAGDAGEAARGERAVGDGYENSPMSTNSRKRGSSSCDVSTASSPGKKSKS 380
Query: 294 PVIQHRENINQARFSSD 244
PV++ + + + F+SD
Sbjct: 381 PVVKLMQGLLNS-FNSD 396
>11_06_0249 +
21697863-21697923,21698119-21698128,21698160-21698766,
21699011-21699090,21699182-21699263,21699357-21699428,
21700128-21700406
Length = 396
Score = 29.1 bits (62), Expect = 4.4
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Frame = -2
Query: 531 PIYIEKVIRHTYNMLREAVEDED-EVIFSNQARVSNERQQSRQTNNSSINNEPLASNAQE 355
P+ EK + M E V E E +N A + QQS + N N+ L S E
Sbjct: 101 PLASEKSTDNNDAMNSEPVNSEPYEASPANNAEKGDVMQQSDENNGDKQENQDLLSPMAE 160
Query: 354 DDGTDVVVFKSNKNAKEIID 295
G+D S ++ +E D
Sbjct: 161 TAGSDSTSVTSMEDVQEAKD 180
>08_01_0973 + 9803917-9804519,9804691-9805596,9805908-9807149
Length = 916
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/77 (22%), Positives = 37/77 (48%)
Frame = -2
Query: 474 EDEDEVIFSNQARVSNERQQSRQTNNSSINNEPLASNAQEDDGTDVVVFKSNKNAKEIID 295
EDEDE +A + E + + N P+++N+++ + V ++ K+
Sbjct: 367 EDEDEEEGEEEAGDAGEAARGERAVGDGYENSPMSTNSRKRGSSSCDVSTASSPGKKSKS 426
Query: 294 PVIQHRENINQARFSSD 244
PV++ + + + F+SD
Sbjct: 427 PVVKLMKGLLNS-FNSD 442
>06_03_0228 -
18439659-18440900,18441212-18441736,18441813-18442118,
18442290-18442877
Length = 886
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/77 (22%), Positives = 37/77 (48%)
Frame = -2
Query: 474 EDEDEVIFSNQARVSNERQQSRQTNNSSINNEPLASNAQEDDGTDVVVFKSNKNAKEIID 295
EDEDE +A + E + + N P+++N+++ + V ++ K+
Sbjct: 337 EDEDEEEGEEEAGDAGEAARGERAVGDGYENSPMSTNSRKRGSSSCDVSTASSPGKKSKS 396
Query: 294 PVIQHRENINQARFSSD 244
PV++ + + + F+SD
Sbjct: 397 PVVKLMKGLLNS-FNSD 412
>05_01_0180 +
1268129-1268237,1268382-1268731,1268903-1269808,
1270120-1271361
Length = 868
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/77 (22%), Positives = 37/77 (48%)
Frame = -2
Query: 474 EDEDEVIFSNQARVSNERQQSRQTNNSSINNEPLASNAQEDDGTDVVVFKSNKNAKEIID 295
EDEDE +A + E + + N P+++N+++ + V ++ K+
Sbjct: 319 EDEDEEEGEEEAGDAGEAARGERAVGDGYENSPMSNNSRKRGSSSYDVSTASSPGKKSKS 378
Query: 294 PVIQHRENINQARFSSD 244
PV++ + + + F+SD
Sbjct: 379 PVVKLMKGLLNS-FNSD 394
>04_03_0328 + 14440877-14441479,14441650-14441955,14442032-14442637
Length = 504
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/77 (22%), Positives = 37/77 (48%)
Frame = -2
Query: 474 EDEDEVIFSNQARVSNERQQSRQTNNSSINNEPLASNAQEDDGTDVVVFKSNKNAKEIID 295
EDEDE +A + E + + N P+++N+++ + V ++ K+
Sbjct: 342 EDEDEEEGEEEAWDAGEAARGERAVGDGYENSPMSTNSRKRGSSSCDVSTASSPGKKSNS 401
Query: 294 PVIQHRENINQARFSSD 244
PV++ + + + F+SD
Sbjct: 402 PVVKLMKGLLNS-FNSD 417
>07_03_0457 -
18404577-18405193,18405317-18405563,18405734-18405953,
18406239-18406333
Length = 392
Score = 28.3 bits (60), Expect = 7.7
Identities = 19/87 (21%), Positives = 38/87 (43%)
Frame = -2
Query: 474 EDEDEVIFSNQARVSNERQQSRQTNNSSINNEPLASNAQEDDGTDVVVFKSNKNAKEIID 295
EDEDE +A + E + + N P+++N+++ + V ++ K+
Sbjct: 230 EDEDEEEEEEEAGDARETARGERAVGDGFENSPMSTNSRKRGSSSCDVSTASSLGKKSKS 289
Query: 294 PVIQHRENINQARFSSDFTSMVEGGNT 214
PV++ + + FTS + NT
Sbjct: 290 PVVKLMRGL-----LNSFTSKSDKSNT 311
>04_03_0383 + 15179587-15180162,15180334-15181149,15181548-15182789
Length = 877
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/77 (22%), Positives = 37/77 (48%)
Frame = -2
Query: 474 EDEDEVIFSNQARVSNERQQSRQTNNSSINNEPLASNAQEDDGTDVVVFKSNKNAKEIID 295
EDEDE +A + E + + N P+++N+++ + V ++ K+
Sbjct: 358 EDEDEEEGEEEAGDAGEAARGERAVADGYENSPMSTNSRKRGSSSCDVSTASSPGKKSKS 417
Query: 294 PVIQHRENINQARFSSD 244
PV++ + + + F+SD
Sbjct: 418 PVVKLMKGLLNS-FNSD 433
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,920,086
Number of Sequences: 37544
Number of extensions: 403296
Number of successful extensions: 1067
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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