Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12k12
(817 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY113522-1|AAM29527.1| 658|Drosophila melanogaster RE60337p pro... 38 0.012
AE013599-89|AAF57326.2| 658|Drosophila melanogaster CG11665-PA ... 38 0.012
AY069772-1|AAL39917.1| 582|Drosophila melanogaster SD01508p pro... 37 0.038
AE014298-2832|AAF48947.1| 582|Drosophila melanogaster CG8034-PA... 37 0.038
BT025126-1|ABE73297.1| 192|Drosophila melanogaster IP08577p pro... 33 0.47
AY089513-1|AAL90251.1| 816|Drosophila melanogaster GH22266p pro... 33 0.47
AE014296-152|AAF47427.1| 816|Drosophila melanogaster CG13907-PA... 33 0.47
AE014134-1070|AAX52658.2| 1064|Drosophila melanogaster CG33531-P... 33 0.47
AE014298-941|AAN09181.1| 632|Drosophila melanogaster CG3168-PC,... 31 1.4
AE014298-940|AAN09180.1| 632|Drosophila melanogaster CG3168-PB,... 31 1.4
AE014298-939|AAF46193.2| 632|Drosophila melanogaster CG3168-PA,... 31 1.4
BT021229-1|AAX33377.1| 553|Drosophila melanogaster RH42588p pro... 29 5.8
AY060688-1|AAL28236.1| 512|Drosophila melanogaster GH12726p pro... 29 5.8
AE014297-1569|AAF54851.2| 553|Drosophila melanogaster CG12286-P... 29 5.8
AY119010-1|AAM50870.1| 142|Drosophila melanogaster LP03924p pro... 29 7.6
AY118521-1|AAM49890.1| 774|Drosophila melanogaster LD17982p pro... 29 7.6
AL024484-3|CAA19670.1| 146|Drosophila melanogaster EG:96G10.3,F... 29 7.6
AE014298-499|AAF45855.1| 146|Drosophila melanogaster CG10788-PB... 29 7.6
AE014134-2948|AAF53681.1| 774|Drosophila melanogaster CG10414-P... 29 7.6
>AY113522-1|AAM29527.1| 658|Drosophila melanogaster RE60337p
protein.
Length = 658
Score = 38.3 bits (85), Expect = 0.012
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
Frame = -2
Query: 774 GIFAGIGCALTGQQTEVIITHFFREKLTMAQRIVRMAPSVGNCLIPILVGYLCTVYTGDV 595
G+ GIG L+ T I+T +F + +A + ++G+ ++P L+ +L Y
Sbjct: 153 GVLVGIGAGLSFPPTVYIVTSYFAKLRGLANGLCISGSALGSIILPPLLRWLLETYGYHG 212
Query: 594 VVMIYGAIVMQNCLFLASYTRPIYIEKV-IRHTYNMLREAVEDED 463
+I G I + N A + P+ V + L E+ED
Sbjct: 213 SCLIMGGITL-NVFVAALFYEPVEQHMVRVPRARQALENIPEEED 256
>AE013599-89|AAF57326.2| 658|Drosophila melanogaster CG11665-PA
protein.
Length = 658
Score = 38.3 bits (85), Expect = 0.012
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
Frame = -2
Query: 774 GIFAGIGCALTGQQTEVIITHFFREKLTMAQRIVRMAPSVGNCLIPILVGYLCTVYTGDV 595
G+ GIG L+ T I+T +F + +A + ++G+ ++P L+ +L Y
Sbjct: 153 GVLVGIGAGLSFPPTVYIVTSYFAKLRGLANGLCISGSALGSIILPPLLRWLLETYGYHG 212
Query: 594 VVMIYGAIVMQNCLFLASYTRPIYIEKV-IRHTYNMLREAVEDED 463
+I G I + N A + P+ V + L E+ED
Sbjct: 213 SCLIMGGITL-NVFVAALFYEPVEQHMVRVPRARQALENIPEEED 256
>AY069772-1|AAL39917.1| 582|Drosophila melanogaster SD01508p
protein.
Length = 582
Score = 36.7 bits (81), Expect = 0.038
Identities = 21/82 (25%), Positives = 39/82 (47%)
Frame = -2
Query: 810 ATTNDHIVNIFSGIFAGIGCALTGQQTEVIITHFFREKLTMAQRIVRMAPSVGNCLIPIL 631
AT+ HI++ +S + GIG L+ V + H+F+ K A + ++G ++P L
Sbjct: 38 ATSMAHILSTYS-VINGIGVGLSTSAAFVALNHYFKHKRGQAVGLSMAGTAMGMLIMPQL 96
Query: 630 VGYLCTVYTGDVVVMIYGAIVM 565
V L Y V++ + +
Sbjct: 97 VRILLEAYDFRGAVLLLAGVAL 118
>AE014298-2832|AAF48947.1| 582|Drosophila melanogaster CG8034-PA
protein.
Length = 582
Score = 36.7 bits (81), Expect = 0.038
Identities = 21/82 (25%), Positives = 39/82 (47%)
Frame = -2
Query: 810 ATTNDHIVNIFSGIFAGIGCALTGQQTEVIITHFFREKLTMAQRIVRMAPSVGNCLIPIL 631
AT+ HI++ +S + GIG L+ V + H+F+ K A + ++G ++P L
Sbjct: 38 ATSMAHILSTYS-VINGIGVGLSTSAAFVALNHYFKHKRGQAVGLSMAGTAMGMLIMPQL 96
Query: 630 VGYLCTVYTGDVVVMIYGAIVM 565
V L Y V++ + +
Sbjct: 97 VRILLEAYDFRGAVLLLAGVAL 118
>BT025126-1|ABE73297.1| 192|Drosophila melanogaster IP08577p
protein.
Length = 192
Score = 33.1 bits (72), Expect = 0.47
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +2
Query: 275 SLCWMTGSMISLAFLFDLNTTTSVPSSSCALLANGSLLIEL 397
+LCW+T ++I LA F + T P + A+ +NG LL E+
Sbjct: 62 TLCWLTLTLILLANRFGMGTAVGTPETPAAVGSNG-LLAEM 101
>AY089513-1|AAL90251.1| 816|Drosophila melanogaster GH22266p
protein.
Length = 816
Score = 33.1 bits (72), Expect = 0.47
Identities = 21/98 (21%), Positives = 38/98 (38%)
Frame = -2
Query: 807 TTNDHIVNIFSGIFAGIGCALTGQQTEVIITHFFREKLTMAQRIVRMAPSVGNCLIPILV 628
+TN ++ G G G + V + ++F K ++A I G L
Sbjct: 164 STNVSMLMATYGFMGGFGFGMIYLPAVVAVGYYFETKRSLATGIAVCGSGFGTFAFAPLA 223
Query: 627 GYLCTVYTGDVVVMIYGAIVMQNCLFLASYTRPIYIEK 514
YL Y ++I+ +++ NC + RP+ K
Sbjct: 224 TYLLEEYGWKNALLIFAGLIL-NCAIFGAMMRPLTYPK 260
>AE014296-152|AAF47427.1| 816|Drosophila melanogaster CG13907-PA
protein.
Length = 816
Score = 33.1 bits (72), Expect = 0.47
Identities = 21/98 (21%), Positives = 38/98 (38%)
Frame = -2
Query: 807 TTNDHIVNIFSGIFAGIGCALTGQQTEVIITHFFREKLTMAQRIVRMAPSVGNCLIPILV 628
+TN ++ G G G + V + ++F K ++A I G L
Sbjct: 164 STNVSMLMATYGFMGGFGFGMIYLPAVVAVGYYFETKRSLATGIAVCGSGFGTFAFAPLA 223
Query: 627 GYLCTVYTGDVVVMIYGAIVMQNCLFLASYTRPIYIEK 514
YL Y ++I+ +++ NC + RP+ K
Sbjct: 224 TYLLEEYGWKNALLIFAGLIL-NCAIFGAMMRPLTYPK 260
>AE014134-1070|AAX52658.2| 1064|Drosophila melanogaster CG33531-PA
protein.
Length = 1064
Score = 33.1 bits (72), Expect = 0.47
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +2
Query: 275 SLCWMTGSMISLAFLFDLNTTTSVPSSSCALLANGSLLIEL 397
+LCW+T ++I LA F + T P + A+ +NG LL E+
Sbjct: 62 TLCWLTLTLILLANRFGMGTAVGTPETPAAVGSNG-LLAEM 101
>AE014298-941|AAN09181.1| 632|Drosophila melanogaster CG3168-PC,
isoform C protein.
Length = 632
Score = 31.5 bits (68), Expect = 1.4
Identities = 25/84 (29%), Positives = 37/84 (44%)
Frame = -2
Query: 783 IFSGIFAGIGCALTGQQTEVIITHFFREKLTMAQRIVRMAPSVGNCLIPILVGYLCTVYT 604
IFSG + AL TEV T + ++ R+ +GN +I L+ C T
Sbjct: 547 IFSGAISAANAALDCLITEVFPTKLRATGVAISMVAARLGGIIGNIVIAQLLDNYCPSPT 606
Query: 603 GDVVVMIYGAIVMQNCLFLASYTR 532
V ++ G +M CL L + TR
Sbjct: 607 FIVSGLLIGGGLM--CLLLPNTTR 628
>AE014298-940|AAN09180.1| 632|Drosophila melanogaster CG3168-PB,
isoform B protein.
Length = 632
Score = 31.5 bits (68), Expect = 1.4
Identities = 25/84 (29%), Positives = 37/84 (44%)
Frame = -2
Query: 783 IFSGIFAGIGCALTGQQTEVIITHFFREKLTMAQRIVRMAPSVGNCLIPILVGYLCTVYT 604
IFSG + AL TEV T + ++ R+ +GN +I L+ C T
Sbjct: 547 IFSGAISAANAALDCLITEVFPTKLRATGVAISMVAARLGGIIGNIVIAQLLDNYCPSPT 606
Query: 603 GDVVVMIYGAIVMQNCLFLASYTR 532
V ++ G +M CL L + TR
Sbjct: 607 FIVSGLLIGGGLM--CLLLPNTTR 628
>AE014298-939|AAF46193.2| 632|Drosophila melanogaster CG3168-PA,
isoform A protein.
Length = 632
Score = 31.5 bits (68), Expect = 1.4
Identities = 25/84 (29%), Positives = 37/84 (44%)
Frame = -2
Query: 783 IFSGIFAGIGCALTGQQTEVIITHFFREKLTMAQRIVRMAPSVGNCLIPILVGYLCTVYT 604
IFSG + AL TEV T + ++ R+ +GN +I L+ C T
Sbjct: 547 IFSGAISAANAALDCLITEVFPTKLRATGVAISMVAARLGGIIGNIVIAQLLDNYCPSPT 606
Query: 603 GDVVVMIYGAIVMQNCLFLASYTR 532
V ++ G +M CL L + TR
Sbjct: 607 FIVSGLLIGGGLM--CLLLPNTTR 628
>BT021229-1|AAX33377.1| 553|Drosophila melanogaster RH42588p
protein.
Length = 553
Score = 29.5 bits (63), Expect = 5.8
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -2
Query: 774 GIFAGIGCALTGQQTEVIITHFFREKLTMAQRIVRMAPSVGNCLIP 637
GI G+G AL T I+ H+F+ L V SV ++P
Sbjct: 184 GIMFGLGAALAYTPTLAILGHYFKRYLGKVSGFVTAGSSVFTVILP 229
>AY060688-1|AAL28236.1| 512|Drosophila melanogaster GH12726p
protein.
Length = 512
Score = 29.5 bits (63), Expect = 5.8
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -2
Query: 774 GIFAGIGCALTGQQTEVIITHFFREKLTMAQRIVRMAPSVGNCLIP 637
GI G+G AL T I+ H+F+ L V SV ++P
Sbjct: 143 GIMFGLGAALAYTPTLAILGHYFKRYLGKVSGFVTAGSSVFTVILP 188
>AE014297-1569|AAF54851.2| 553|Drosophila melanogaster CG12286-PA
protein.
Length = 553
Score = 29.5 bits (63), Expect = 5.8
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -2
Query: 774 GIFAGIGCALTGQQTEVIITHFFREKLTMAQRIVRMAPSVGNCLIP 637
GI G+G AL T I+ H+F+ L V SV ++P
Sbjct: 184 GIMFGLGAALAYTPTLAILGHYFKRYLGKVSGFVTAGSSVFTVILP 229
>AY119010-1|AAM50870.1| 142|Drosophila melanogaster LP03924p
protein.
Length = 142
Score = 29.1 bits (62), Expect = 7.6
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = -2
Query: 540 YTRPIYIEKVIRHTYNMLREAVEDEDEVIFSNQARVSNERQQSRQTNNSSINNEPLASNA 361
YTR +Y K IRH Y +A D+DE + S R++S +++SS + + N+
Sbjct: 73 YTRHVYRPKRIRHIYR--HKA--DDDESSTDRTSTRSRRRRRSSSSSSSSGSTSSRSGNS 128
Query: 360 Q 358
+
Sbjct: 129 R 129
>AY118521-1|AAM49890.1| 774|Drosophila melanogaster LD17982p
protein.
Length = 774
Score = 29.1 bits (62), Expect = 7.6
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Frame = -2
Query: 546 ASYTRPIYIEKVIRHTYNMLREA-VEDE---DEVIFSNQARVSNERQQSRQTNNSSINNE 379
A T+PI E+ + +E VEDE ++ Q R+ Q N SI E
Sbjct: 363 ADETKPISTEEPAAESSEEQKEGEVEDEKPEEDESPDYQPRIVQVTNYQAQEANESIKEE 422
Query: 378 PLASNAQEDDGT 343
PL Q+DD T
Sbjct: 423 PLEEIMQDDDVT 434
>AL024484-3|CAA19670.1| 146|Drosophila melanogaster
EG:96G10.3,FBgn0010295;ng3 protein.
Length = 146
Score = 29.1 bits (62), Expect = 7.6
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = -2
Query: 540 YTRPIYIEKVIRHTYNMLREAVEDEDEVIFSNQARVSNERQQSRQTNNSSINNEPLASNA 361
YTR +Y K IRH Y +A D+DE + S R++S +++SS + + N+
Sbjct: 77 YTRHVYRPKRIRHIYR--HKA--DDDESSTDRTSTRSRRRRRSSSSSSSSGSTSSRSGNS 132
Query: 360 Q 358
+
Sbjct: 133 R 133
>AE014298-499|AAF45855.1| 146|Drosophila melanogaster CG10788-PB
protein.
Length = 146
Score = 29.1 bits (62), Expect = 7.6
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = -2
Query: 540 YTRPIYIEKVIRHTYNMLREAVEDEDEVIFSNQARVSNERQQSRQTNNSSINNEPLASNA 361
YTR +Y K IRH Y +A D+DE + S R++S +++SS + + N+
Sbjct: 77 YTRHVYRPKRIRHIYR--HKA--DDDESSTDRTSTRSRRRRRSSSSSSSSGSTSSRSGNS 132
Query: 360 Q 358
+
Sbjct: 133 R 133
>AE014134-2948|AAF53681.1| 774|Drosophila melanogaster CG10414-PA
protein.
Length = 774
Score = 29.1 bits (62), Expect = 7.6
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Frame = -2
Query: 546 ASYTRPIYIEKVIRHTYNMLREA-VEDE---DEVIFSNQARVSNERQQSRQTNNSSINNE 379
A T+PI E+ + +E VEDE ++ Q R+ Q N SI E
Sbjct: 363 ADETKPISTEEPAAESSEEQKEGEVEDEKPEEDESPDYQPRIVQVTNYQAQEANESIKEE 422
Query: 378 PLASNAQEDDGT 343
PL Q+DD T
Sbjct: 423 PLEEIMQDDDVT 434
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,571,828
Number of Sequences: 53049
Number of extensions: 723043
Number of successful extensions: 2487
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2467
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3839531124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -