Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12k12
(817 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29379-7|ABC71826.1| 710|Caenorhabditis elegans Patterned expre... 41 0.001
U29379-6|AAF99981.3| 677|Caenorhabditis elegans Patterned expre... 41 0.001
U29379-5|ABC71825.1| 777|Caenorhabditis elegans Patterned expre... 41 0.001
AF089729-1|AAD04156.1| 458|Caenorhabditis elegans SMG-7 protein. 35 0.080
AC024204-5|AAF36043.1| 458|Caenorhabditis elegans Suppressor wi... 35 0.080
Z70206-2|CAA94126.2| 771|Caenorhabditis elegans Hypothetical pr... 32 0.43
U50184-1|ABJ99064.1| 1540|Caenorhabditis elegans Hypothetical pr... 31 0.99
AC006617-1|AAF39770.2| 397|Caenorhabditis elegans Hypothetical ... 30 2.3
Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z47073-1|CAA87371.3| 931|Caenorhabditis elegans Hypothetical pr... 29 3.0
U49829-6|AAA93387.1| 498|Caenorhabditis elegans Hypothetical pr... 28 7.0
U40945-1|AAA81719.2| 656|Caenorhabditis elegans Hypothetical pr... 28 7.0
AL032637-5|CAA21609.1| 245|Caenorhabditis elegans Hypothetical ... 28 7.0
Z82073-3|CAB04926.1| 631|Caenorhabditis elegans Hypothetical pr... 28 9.2
Z50794-8|CAA90655.2| 450|Caenorhabditis elegans Hypothetical pr... 28 9.2
Z49937-9|CAO78727.1| 450|Caenorhabditis elegans Hypothetical pr... 28 9.2
U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical pr... 28 9.2
AL023835-12|CAA19484.1| 412|Caenorhabditis elegans Hypothetical... 28 9.2
AF040650-5|AAB95008.1| 325|Caenorhabditis elegans Hypothetical ... 28 9.2
>U29379-7|ABC71826.1| 710|Caenorhabditis elegans Patterned
expression site protein22, isoform c protein.
Length = 710
Score = 40.7 bits (91), Expect = 0.001
Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Frame = -2
Query: 810 ATTNDHIVNIFSGIFAGIGCALTGQQTEVIITHFFREKLTMAQRIVRMAPSVGNCLIPIL 631
A+ N ++ + G+ G+G + V++ +F K MA I VG L+P L
Sbjct: 161 ASPNIYVFMLIYGVMGGLGFGMIYLPAIVVVGFYFDSKRAMATGISVAGSGVGTFLVP-L 219
Query: 630 VGYLCTVYTGDVVVMIYGAIVMQNCLFLASYTRP---IYIEKVIRHTYNMLREAV----E 472
+ +C G + A+++ +C+F RP + + ++ LR+A+ +
Sbjct: 220 ICQVCIANLGWQKTIWVLAVMIFSCVFYGYLYRPLPMVDLNEIRDQEMEPLRQALSKVED 279
Query: 471 DEDEVIFS 448
DEDE + S
Sbjct: 280 DEDEAVES 287
>U29379-6|AAF99981.3| 677|Caenorhabditis elegans Patterned
expression site protein22, isoform a protein.
Length = 677
Score = 40.7 bits (91), Expect = 0.001
Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Frame = -2
Query: 810 ATTNDHIVNIFSGIFAGIGCALTGQQTEVIITHFFREKLTMAQRIVRMAPSVGNCLIPIL 631
A+ N ++ + G+ G+G + V++ +F K MA I VG L+P L
Sbjct: 106 ASPNIYVFMLIYGVMGGLGFGMIYLPAIVVVGFYFDSKRAMATGISVAGSGVGTFLVP-L 164
Query: 630 VGYLCTVYTGDVVVMIYGAIVMQNCLFLASYTRP---IYIEKVIRHTYNMLREAV----E 472
+ +C G + A+++ +C+F RP + + ++ LR+A+ +
Sbjct: 165 ICQVCIANLGWQKTIWVLAVMIFSCVFYGYLYRPLPMVDLNEIRDQEMEPLRQALSKVED 224
Query: 471 DEDEVIFS 448
DEDE + S
Sbjct: 225 DEDEAVES 232
>U29379-5|ABC71825.1| 777|Caenorhabditis elegans Patterned
expression site protein22, isoform b protein.
Length = 777
Score = 40.7 bits (91), Expect = 0.001
Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Frame = -2
Query: 810 ATTNDHIVNIFSGIFAGIGCALTGQQTEVIITHFFREKLTMAQRIVRMAPSVGNCLIPIL 631
A+ N ++ + G+ G+G + V++ +F K MA I VG L+P L
Sbjct: 161 ASPNIYVFMLIYGVMGGLGFGMIYLPAIVVVGFYFDSKRAMATGISVAGSGVGTFLVP-L 219
Query: 630 VGYLCTVYTGDVVVMIYGAIVMQNCLFLASYTRP---IYIEKVIRHTYNMLREAV----E 472
+ +C G + A+++ +C+F RP + + ++ LR+A+ +
Sbjct: 220 ICQVCIANLGWQKTIWVLAVMIFSCVFYGYLYRPLPMVDLNEIRDQEMEPLRQALSKVED 279
Query: 471 DEDEVIFS 448
DEDE + S
Sbjct: 280 DEDEAVES 287
>AF089729-1|AAD04156.1| 458|Caenorhabditis elegans SMG-7 protein.
Length = 458
Score = 34.7 bits (76), Expect = 0.080
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = -2
Query: 477 VEDEDEVIFSNQARVSNERQQSRQTNNSSINNEPLASNAQEDDGTDVVVFKSNKNAK 307
+EDEDE S+Q+ + E Q+S T+ S I NE ++ + + V+ + + +
Sbjct: 387 IEDEDESKDSDQSTIPEEDQKSLSTDTSRIQNEDSEPESESESSDEEVLQRGRRRGR 443
>AC024204-5|AAF36043.1| 458|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 7 protein.
Length = 458
Score = 34.7 bits (76), Expect = 0.080
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = -2
Query: 477 VEDEDEVIFSNQARVSNERQQSRQTNNSSINNEPLASNAQEDDGTDVVVFKSNKNAK 307
+EDEDE S+Q+ + E Q+S T+ S I NE ++ + + V+ + + +
Sbjct: 387 IEDEDESKDSDQSTIPEEDQKSLSTDTSRIQNEDSEPESESESSDEEVLQRGRRRGR 443
>Z70206-2|CAA94126.2| 771|Caenorhabditis elegans Hypothetical
protein C49F8.2 protein.
Length = 771
Score = 32.3 bits (70), Expect = 0.43
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Frame = -2
Query: 774 GIFAGIGCALTGQQTEVIITHFFREKLTMAQRIVRMAPSVGNCLIPILVG----YLCTVY 607
G+ G+G + VI+T++F ++ +A VG + PIL+ YL +
Sbjct: 170 GLGCGVGMSFIYNAAIVIVTYYFEKRRGLATSFAVSGTGVGTVIYPILLNLSMIYLASFV 229
Query: 606 TGDVVVMIYGAIV 568
+ +++I+ A++
Sbjct: 230 SDIRIILIFFAVM 242
>U50184-1|ABJ99064.1| 1540|Caenorhabditis elegans Hypothetical protein
W03A3.2 protein.
Length = 1540
Score = 31.1 bits (67), Expect = 0.99
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 8/97 (8%)
Frame = -2
Query: 570 VMQNCLFLASYTRPIYIEKV-IRHTYNMLREA----VEDEDEVIFSNQARVSNERQQSRQ 406
++ N L S+ RP+ + I + RE+ ED + +S+ R++S
Sbjct: 836 ILNNSLLEDSFDRPVPRSSIPILNFITPKRESPTPYFEDSFDRPIPGSLPISSSRRKSVL 895
Query: 405 TNNSSINN---EPLASNAQEDDGTDVVVFKSNKNAKE 304
TN +++++ E + SNA +++ DV V K+AKE
Sbjct: 896 TNIANLDSSRRESINSNASDNNSFDVFVTPPTKSAKE 932
>AC006617-1|AAF39770.2| 397|Caenorhabditis elegans Hypothetical
protein C39B5.6 protein.
Length = 397
Score = 29.9 bits (64), Expect = 2.3
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Frame = -1
Query: 766 RRYRLRINGSANRGHHNTL-LQGKTDHGSEDSPDGSFSRKLLDTNTSRLSLHGIHWRRCS 590
R++ + NG A + +G+T + + + R +++ N +L +HG +
Sbjct: 148 RQFEILKNGGAVQNETRAADSEGRTVSMRDKETEETDYRFMVEPNLPQLKIHGKWLKEVE 207
Query: 589 HDLRCYCDAKLSVF----GFIHSSNLHRESYPTHLQYAKR 482
+L+C A V GF S +H P L + KR
Sbjct: 208 EELKCEGKADFEVLREDVGFDARSAVHIAEEPELLSFVKR 247
>Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical
protein C23H4.6 protein.
Length = 1137
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/59 (22%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = -2
Query: 552 FLASYTRPIYIEKV----IRHTYNMLREAVEDEDEVIFSNQARVSNERQQSRQTNNSSI 388
F S +Y+E IR +YN E+++ E++ + ++NE+++ ++ S +
Sbjct: 202 FKPSTVYKLYLESTNLENIRQSYNRFAESIDHSAELVTAKSEEIANEKRKLKRAQESRV 260
>Z47073-1|CAA87371.3| 931|Caenorhabditis elegans Hypothetical
protein ZC506.1 protein.
Length = 931
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -2
Query: 801 NDHIVNIFSGIFAGIGCALTGQQTEVIITHFFREKLTMAQ-RIVRMAPSVGNCLIP 637
+DH+V++F +G ++ ++ + +LT ++++MA VGN L+P
Sbjct: 115 SDHVVSVFETNIRVLGGLISAHVLAELVKEKYPNRLTTYDNQLLKMATEVGNRLLP 170
>U49829-6|AAA93387.1| 498|Caenorhabditis elegans Hypothetical
protein F27D9.2 protein.
Length = 498
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -2
Query: 684 QRIVRMAPSVGNCLIPILVGYLCTVYTGDV--VVMIYGAIVM 565
Q + +MA S G L P+L+ Y+ T+Y + +++I +V+
Sbjct: 431 QGVYQMAGSFGRMLAPLLMSYVYTLYGPSIPWLILIVNLVVL 472
>U40945-1|AAA81719.2| 656|Caenorhabditis elegans Hypothetical
protein F10D7.1 protein.
Length = 656
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = -2
Query: 420 QQSRQTNNS-SINNEPLASNAQEDDGTDVV 334
++S+ T+NS SINN L+S +D TD++
Sbjct: 471 KKSQNTSNSDSINNSTLSSEDADDSSTDLI 500
>AL032637-5|CAA21609.1| 245|Caenorhabditis elegans Hypothetical
protein Y43F8C.5 protein.
Length = 245
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/77 (24%), Positives = 38/77 (49%)
Frame = -2
Query: 498 YNMLREAVEDEDEVIFSNQARVSNERQQSRQTNNSSINNEPLASNAQEDDGTDVVVFKSN 319
+ ML+E + E E F R+++ R++ + N S NE + DG++ + +
Sbjct: 32 WKMLQEQFDKEVEQHF---LRLNDYRREVAKMMNWSSMNELKYGDFNVSDGSNSFYYSTT 88
Query: 318 KNAKEIIDPVIQHRENI 268
+ KE+++ +I NI
Sbjct: 89 NSFKEVVNNLIYWANNI 105
>Z82073-3|CAB04926.1| 631|Caenorhabditis elegans Hypothetical
protein W06D12.5 protein.
Length = 631
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/101 (18%), Positives = 42/101 (41%), Gaps = 1/101 (0%)
Frame = -2
Query: 522 IEKVIRHTYNMLREAVEDEDEVIFSNQARVSN-ERQQSRQTNNSSINNEPLASNAQEDDG 346
I I+ + L + E+E+E F+ VSN + ++ + ++ N+ S
Sbjct: 65 ISPEIQRIEDPLASSDEEENEKPFARSISVSNADLEERHRLDSIPENDRSQQSRYTRHSS 124
Query: 345 TDVVVFKSNKNAKEIIDPVIQHRENINQARFSSDFTSMVEG 223
D + K N++++++ + R DF + + G
Sbjct: 125 IDKGILKPQNNSEDVVEKYYERNNYTVTGRDRPDFYNKLPG 165
>Z50794-8|CAA90655.2| 450|Caenorhabditis elegans Hypothetical
protein F59F5.1 protein.
Length = 450
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/52 (23%), Positives = 23/52 (44%)
Frame = -2
Query: 762 GIGCALTGQQTEVIITHFFREKLTMAQRIVRMAPSVGNCLIPILVGYLCTVY 607
GIGC L I +F++K + + P +G ++P + ++ Y
Sbjct: 138 GIGCGLMRNSIISIQCEYFKKKRNTVMAAISIGPGLGIFILPRTLKFIMVKY 189
>Z49937-9|CAO78727.1| 450|Caenorhabditis elegans Hypothetical
protein F59F5.1 protein.
Length = 450
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/52 (23%), Positives = 23/52 (44%)
Frame = -2
Query: 762 GIGCALTGQQTEVIITHFFREKLTMAQRIVRMAPSVGNCLIPILVGYLCTVY 607
GIGC L I +F++K + + P +G ++P + ++ Y
Sbjct: 138 GIGCGLMRNSIISIQCEYFKKKRNTVMAAISIGPGLGIFILPRTLKFIMVKY 189
>U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical protein
F21C10.7 protein.
Length = 2541
Score = 27.9 bits (59), Expect = 9.2
Identities = 20/76 (26%), Positives = 36/76 (47%)
Frame = -2
Query: 477 VEDEDEVIFSNQARVSNERQQSRQTNNSSINNEPLASNAQEDDGTDVVVFKSNKNAKEII 298
V + EVI S+ + E+QQ +Q S++ + D V + +K+ +
Sbjct: 1748 VVKQTEVITSDVDKNYQEQQQKQQQVTSTVTETTSGEGWVQHQHQDFV--EPHKSTITVK 1805
Query: 297 DPVIQHRENINQARFS 250
I+ ++NINQ RF+
Sbjct: 1806 KLDIEEQQNINQQRFA 1821
>AL023835-12|CAA19484.1| 412|Caenorhabditis elegans Hypothetical
protein Y37A1B.13 protein.
Length = 412
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 339 VVVFKSNKNAKEIIDPVIQHREN 271
+ +F SNK +KEI + ++H EN
Sbjct: 265 IFIFLSNKGSKEIANIALEHHEN 287
>AF040650-5|AAB95008.1| 325|Caenorhabditis elegans Hypothetical
protein T04B8.2 protein.
Length = 325
Score = 27.9 bits (59), Expect = 9.2
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Frame = -3
Query: 266 IKHDFLQISLAWLKVAIRI-DSLPTLETRTGSQVTLDH*R*VITKE*PVTKNWPVLKTTV 90
+K++FL L + ++ +LP LE S +TLDH + + K KN V K
Sbjct: 167 LKYEFLTRCLQKTMIDFKLLVNLPRLEFWKDSDLTLDHLKMMNCKTIRFGKNAIVPKQLN 226
Query: 89 RIHNHFI-GRL-QLKQFRITWFL 27
H++ G L +L++F++ W+L
Sbjct: 227 DYIFHWLAGNLSKLRRFQMKWWL 249
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,497,915
Number of Sequences: 27780
Number of extensions: 381269
Number of successful extensions: 1250
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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