Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12k12
         (817 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    30   0.022
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    27   0.21 
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    25   0.84 
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   5.9  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              22   7.8  

>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 30.3 bits (65), Expect = 0.022
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = -2

Query: 474 EDEDEVIFSNQARVSNERQQSRQTNNSSINNE 379
           E+ D V+F  +A   ++  Q ++ N++S+N+E
Sbjct: 19  EESDNVLFDKRAPTGHQEMQGKEKNSASLNSE 50


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 27.1 bits (57), Expect = 0.21
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +1

Query: 10  GGHFHSKNQVILNCFNCSLPIKWLWILTVVFNTGQFLVTGYSFVITY 150
           GG   +  +V+  C  CS+ +K++   T VFN  +  +TG + V TY
Sbjct: 345 GGRTDTTYRVV--CDACSMGVKYI-PNTEVFNDTKITITGLNAVTTY 388


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 25.0 bits (52), Expect = 0.84
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 691 HGSEDSPDGSFSRKLLDTNTSRLSLHGIHWRRCSHDL 581
           H  + S +  F R+ L+  T++  LHG+H     H L
Sbjct: 110 HKEQLSREQRFLRRRLEQLTNQTGLHGLHGLHGLHGL 146


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 10/48 (20%), Positives = 24/48 (50%)
 Frame = -2

Query: 522 IEKVIRHTYNMLREAVEDEDEVIFSNQARVSNERQQSRQTNNSSINNE 379
           ++++IR+T+ +        D +  +N    +N++   +  NN   NN+
Sbjct: 405 VKELIRNTHCVNNN---QNDNIQNTNNQNDNNQKNNKKNANNQKNNNQ 449


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -1

Query: 583 LRCYCDAKLSVFGFIHSSNLHRE 515
           L CY D  L   GF+++     E
Sbjct: 59  LACYVDCMLKKVGFVNADTTFNE 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,506
Number of Sequences: 438
Number of extensions: 4568
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)