Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12k11
         (152 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomy...    23   7.2  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    22   9.5  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        22   9.5  

>SPCC1450.06c |grx3||monothiol glutaredoxin
          Grx3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 166

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -3

Query: 69 VMSLLLIHVLMFS 31
          ++SLLLIH+ +FS
Sbjct: 13 IISLLLIHIFIFS 25


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 57  IGSLQSACALNKWLLFD 107
           +GSL+ A A+ KWL+ D
Sbjct: 381 LGSLKLAHAIMKWLVSD 397


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 60  GSLQSACALNKWLLFDNI 113
           G L  A    KW+LF NI
Sbjct: 211 GVLTQAVITGKWILFTNI 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 458,436
Number of Sequences: 5004
Number of extensions: 4968
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 2,362,478
effective HSP length: 31
effective length of database: 2,207,354
effective search space used: 41939726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)