Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12k06
         (305 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0958 + 33073302-33073442,33073839-33073913,33074382-330744...    32   0.10 
05_06_0274 - 26860573-26860783,26861125-26861202,26861671-26863157     27   2.2  
04_04_1057 - 30451759-30452523,30452627-30452701,30453180-304532...    27   3.8  
01_06_1246 - 35703119-35703811,35704033-35704074,35704355-357045...    26   6.7  
06_03_1223 - 28526869-28527192,28527515-28527634,28527742-285278...    25   8.9  
04_04_0381 - 24839505-24839918,24840009-24840779,24841369-248417...    25   8.9  

>02_05_0958 +
           33073302-33073442,33073839-33073913,33074382-33074497,
           33076863-33076977,33077100-33077228,33078907-33078954,
           33079343-33079469,33079634-33079789,33080031-33080287,
           33080431-33080580,33080660-33080714,33080793-33081088,
           33081252-33081335,33081869-33081941,33082164-33082291,
           33082905-33083090,33083179-33083316,33083394-33083519,
           33083705-33083965
          Length = 886

 Score = 31.9 bits (69), Expect = 0.10
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -1

Query: 278 PYYRLGNHEK-VEYIPLKLALNDDITSEP-QQFSEPVYKMPIDDMMVGYNNTTSNV 117
           P Y    H+K +E IP+     DD   EP    +EP  + P+D+ ++  N    +V
Sbjct: 746 PAYNAKLHQKSLEVIPVGFIFEDDTLVEPANSLAEPQLQQPLDNGLIDVNQLLESV 801


>05_06_0274 - 26860573-26860783,26861125-26861202,26861671-26863157
          Length = 591

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 207 DIIVERQFQRDVFHLFVVAQPIVWHVQI 290
           D  V+ Q ++D++  F  + PIV HV +
Sbjct: 403 DTFVDEQLRQDIYLDFTTSDPIVLHVDV 430


>04_04_1057 -
           30451759-30452523,30452627-30452701,30453180-30453254,
           30453503-30453591,30454058-30454157,30454244-30454388,
           30454609-30454658,30455033-30455114,30455200-30455282,
           30455360-30455429,30455523-30455632,30455719-30455872,
           30456639-30456796,30457338-30457517
          Length = 711

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 203 SEPQQFSEPVYKMPIDDMMVGYNNTTSNVSAGI 105
           + P QF+ P Y+M I     G + + S  S GI
Sbjct: 557 ASPSQFTPPNYQMQIPSNSTGMHGSGSPASGGI 589


>01_06_1246 -
           35703119-35703811,35704033-35704074,35704355-35704576,
           35705077-35705466,35705560-35705637
          Length = 474

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 268 GWATTKRWNTSR*NWRSTMIS 206
           GW+  +RW TSR  W S +IS
Sbjct: 265 GWSWMERWMTSR-PWESRVIS 284


>06_03_1223 -
           28526869-28527192,28527515-28527634,28527742-28527816,
           28527905-28527964,28528271-28528370,28528664-28529148,
           28529243-28529437,28529532-28529762,28529851-28529967,
           28530247-28530330,28530755-28530893,28530939-28531090
          Length = 693

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 245 EYIPLKLALNDDITSEPQQFSEPVYKMP 162
           E I L+LAL D IT+      EP  K+P
Sbjct: 135 EEIDLQLALTDAITNNATLILEPSAKLP 162


>04_04_0381 -
           24839505-24839918,24840009-24840779,24841369-24841730,
           24842452-24842830
          Length = 641

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 209 ITSEPQQFSEPVYKMPIDDMMVGYNNTTS 123
           + S  + F  P Y  P ++ ++GY+NTTS
Sbjct: 403 LLSRLRMFLNPGY--PYEESLIGYHNTTS 429


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,349,220
Number of Sequences: 37544
Number of extensions: 103796
Number of successful extensions: 228
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)