Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12k06
         (305 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132898-11|CAB60945.4|  552|Caenorhabditis elegans Hypothetical...    27   3.4  
Z70718-4|CAA94672.1|  225|Caenorhabditis elegans Hypothetical pr...    25   7.9  
U88165-6|AAK21396.2|  214|Caenorhabditis elegans Hypothetical pr...    25   7.9  

>AL132898-11|CAB60945.4|  552|Caenorhabditis elegans Hypothetical
           protein Y59A8B.22 protein.
          Length = 552

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -1

Query: 266 LGNHEKVEYIPLKLALNDDITSEPQQFSEPVYKMPIDD 153
           LG+ E+V   PL+ A +DD+TS P   ++    +  DD
Sbjct: 2   LGDGEEVFANPLQEASSDDVTSPPAAAADVEVSLNDDD 39


>Z70718-4|CAA94672.1|  225|Caenorhabditis elegans Hypothetical
           protein C04G2.5 protein.
          Length = 225

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 181 SLNCCGSLVISSLSANFNGMYSTFSWLPNR 270
           S+N   SLVI+S      G   T  W PN+
Sbjct: 28  SINSDASLVITSSRLAMQGADETSDWTPNK 57


>U88165-6|AAK21396.2|  214|Caenorhabditis elegans Hypothetical
           protein F54C1.8 protein.
          Length = 214

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/40 (25%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +3

Query: 189 LLRFAGDIIVERQFQRDVFHLFVVAQPI-VWHVQIHVYNF 305
           LL+    + ++++++  VF+LF+VA  + +W + + ++ F
Sbjct: 133 LLQRLPSLGIDKKYENCVFYLFIVALVVTLWKIVLGIFCF 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,604,584
Number of Sequences: 27780
Number of extensions: 92037
Number of successful extensions: 269
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)