Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12k06
         (305 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   4.5  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   4.5  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   4.5  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   4.5  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   4.5  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   4.5  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   4.5  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    20   6.0  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    20   6.0  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    20   6.0  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    20   6.0  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    20   7.9  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           20   7.9  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    20   7.9  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           20   7.9  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 72  SYKSDYTN*NYNS 110
           +YK +Y N NYN+
Sbjct: 93  NYKYNYNNNNYNN 105


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 72  SYKSDYTN*NYNS 110
           +YK +Y N NYN+
Sbjct: 93  NYKYNYNNNNYNN 105


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 72  SYKSDYTN*NYNS 110
           +YK +Y N NYN+
Sbjct: 95  NYKYNYNNNNYNN 107


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 72  SYKSDYTN*NYNS 110
           +YK +Y N NYN+
Sbjct: 95  NYKYNYNNNNYNN 107


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 72  SYKSDYTN*NYNS 110
           +YK +Y N NYN+
Sbjct: 95  NYKYNYNNNNYNN 107


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 72  SYKSDYTN*NYNS 110
           +YK +Y N NYN+
Sbjct: 95  NYKYNYNNNNYNN 107


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 72  SYKSDYTN*NYNS 110
           +YK +Y N NYN+
Sbjct: 328 NYKYNYNNNNYNN 340


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 72  SYKSDYTN*NYN 107
           +YK +Y N NYN
Sbjct: 94  NYKYNYNNNNYN 105


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 72  SYKSDYTN*NYN 107
           +YK +Y N NYN
Sbjct: 94  NYKYNYNNNNYN 105


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 72  SYKSDYTN*NYN 107
           +YK +Y N NYN
Sbjct: 94  NYKYNYNNNNYN 105


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 72  SYKSDYTN*NYN 107
           +YK +Y N NYN
Sbjct: 94  NYKYNYNNNNYN 105


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 251 FRGCPTDSMARPNSCLQ 301
           F GCPT ++     CL+
Sbjct: 258 FMGCPTRNVKEMIRCLR 274


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 251 FRGCPTDSMARPNSCLQ 301
           F GCPT ++     CL+
Sbjct: 129 FMGCPTRNVKEMIRCLR 145


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -1

Query: 284 DVPYYRLGNHEKV 246
           +VP + +GNH++V
Sbjct: 351 NVPNWVMGNHDRV 363


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 251 FRGCPTDSMARPNSCLQ 301
           F GCPT ++     CL+
Sbjct: 258 FMGCPTRNVKEMIRCLR 274


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,491
Number of Sequences: 438
Number of extensions: 1203
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6493812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)