Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12k05
         (233 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0527 + 3960982-3961290,3961371-3961464,3961898-3962084,396...    26   3.7  
09_04_0493 - 18046553-18046990,18047061-18047180,18047290-180474...    26   4.9  
03_05_0345 + 23325842-23325964,23326384-23326828,23326965-233271...    25   6.5  
07_01_0781 - 6051139-6052305                                           25   8.6  

>03_01_0527 +
           3960982-3961290,3961371-3961464,3961898-3962084,
           3962194-3962449,3962561-3962773,3962856-3962942,
           3963089-3963223,3963296-3963409,3963507-3963754,
           3963824-3963904,3963979-3964210,3964340-3964438,
           3964513-3964701,3964928-3965023
          Length = 779

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -2

Query: 121 WYANCDRDIYSTSVTEI*KLNGCESPCVG 35
           W A CD  +   ++TE      CE  C G
Sbjct: 88  WLAGCDAGLSVVNITEFIGTKRCEQDCNG 116


>09_04_0493 -
           18046553-18046990,18047061-18047180,18047290-18047478,
           18047596-18047739,18048673-18048900,18049659-18049838,
           18050304-18050399,18051096-18051262,18051356-18051773,
           18052335-18052517,18053846-18053953,18054053-18054246,
           18054503-18054662
          Length = 874

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 128 VYRIPLGCSKFLRIIKTASAASKVCLR 208
           +Y I + C K L  +K+ASA   + LR
Sbjct: 648 IYNIMIECCKLLPCVKSASAVLSLMLR 674


>03_05_0345 +
           23325842-23325964,23326384-23326828,23326965-23327188,
           23327665-23328171,23328482-23328742
          Length = 519

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/17 (70%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = +3

Query: 156 SSYELSKPQAPP-RRYV 203
           SSYEL  PQ PP R YV
Sbjct: 203 SSYELDDPQMPPGRNYV 219


>07_01_0781 - 6051139-6052305
          Length = 388

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 210 YLKHTFEAALAVLIIRKNLEQP 145
           YL+H++E  L+ L+ RKN+  P
Sbjct: 297 YLEHSWEPILSRLVARKNILFP 318


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,703,086
Number of Sequences: 37544
Number of extensions: 87371
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 14,793,348
effective HSP length: 56
effective length of database: 12,690,884
effective search space used: 266508564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)