Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12k02
(461 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 240 8e-65
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 240 8e-65
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 152 2e-38
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 152 2e-38
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 152 2e-38
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 92 3e-20
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 44 1e-05
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 42 3e-05
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 41 1e-04
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 27 1.4
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 4.3
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 25 5.6
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha... 25 5.6
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 25 7.4
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 25 7.4
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy... 25 7.4
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb... 24 9.8
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat... 24 9.8
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 24 9.8
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 240 bits (587), Expect = 8e-65
Identities = 112/123 (91%), Positives = 116/123 (94%)
Frame = -2
Query: 427 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 248
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 247 IQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPRATNCRKTKCGHTNN 68
IQKESTLHLVLRLRGG IEPSL+ LA KYNCEK ICRKCYARL PRATNCRK KCGHTN
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQ 120
Query: 67 LRP 59
LRP
Sbjct: 121 LRP 123
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 240 bits (587), Expect = 8e-65
Identities = 112/123 (91%), Positives = 116/123 (94%)
Frame = -2
Query: 427 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 248
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 247 IQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPRATNCRKTKCGHTNN 68
IQKESTLHLVLRLRGG IEPSL+ LA KYNCEK ICRKCYARL PRATNCRK KCGHTN
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQ 120
Query: 67 LRP 59
LRP
Sbjct: 121 LRP 123
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 152 bits (369), Expect = 2e-38
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = -2
Query: 427 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 248
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 247 IQKESTLHLVLRLRGG 200
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 152 bits (369), Expect = 2e-38
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = -2
Query: 427 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 248
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 247 IQKESTLHLVLRLRGG 200
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 152 bits (369), Expect = 2e-38
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = -2
Query: 427 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 248
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 247 IQKESTLHLVLRLRGG 200
IQKESTLHLVLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 152 bits (369), Expect = 2e-38
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = -2
Query: 427 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 248
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 247 IQKESTLHLVLRLRGG 200
IQKESTLHLVLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 152 bits (369), Expect = 2e-38
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = -2
Query: 427 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 248
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 247 IQKESTLHLVLRLRGG 200
IQKESTLHLVLRLRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
Score = 152 bits (369), Expect = 2e-38
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = -2
Query: 427 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 248
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 247 IQKESTLHLVLRLRGG 200
IQKESTLHLVLRLRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 152 bits (369), Expect = 2e-38
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = -2
Query: 427 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 248
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 247 IQKESTLHLVLRLRGG 200
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 92.3 bits (219), Expect = 3e-20
Identities = 40/77 (51%), Positives = 57/77 (74%)
Frame = -2
Query: 427 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 248
M I VKTLTGK I L+++ +D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 247 IQKESTLHLVLRLRGGT 197
++ S LHLVL LRGG+
Sbjct: 61 LEGGSVLHLVLALRGGS 77
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 44.0 bits (99), Expect = 1e-05
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Frame = -2
Query: 397 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHL 221
K + +V A I +K KIQ ++ ++Q+LI++G+ L D +T+ +YNI+++ + +
Sbjct: 12 KFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQDFIVCM 71
Query: 220 VLRLRGGTIEP 188
V R + T P
Sbjct: 72 VSRPKTSTSTP 82
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 42.3 bits (95), Expect = 3e-05
Identities = 21/73 (28%), Positives = 39/73 (53%)
Frame = -2
Query: 427 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 248
+ + +K + + V++ ++ +K I I ++QRLI+AG+ L+D +L Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 247 IQKESTLHLVLRL 209
IQ ++HLV L
Sbjct: 64 IQDGHSIHLVKTL 76
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 40.7 bits (91), Expect = 1e-04
Identities = 19/58 (32%), Positives = 33/58 (56%)
Frame = -2
Query: 400 GKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 227
GK LE+E ++T +K ++ +PP++Q++I G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 27.1 bits (57), Expect = 1.4
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = -2
Query: 424 QIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD--Y 251
+I V T+ K +V + T+ +K I P D+ +LI AG+ L + L + +
Sbjct: 5 RIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEEILH 64
Query: 250 NIQKESTLHLVLRLRGGT 197
+ T HLV+ + T
Sbjct: 65 DATDLVTFHLVIAVFNST 82
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 4.3
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 347 FDIFDSVGSFHLQCNGLPRKGFDEYLHCVAPMKNV 451
F ++S+G + L C + FDEYL+ A ++NV
Sbjct: 2887 FKPYESLGKYMLSCLDDGKYAFDEYLY-HAEIQNV 2920
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 25.0 bits (52), Expect = 5.6
Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 13/116 (11%)
Frame = -2
Query: 412 KTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA------GKQLE-------D 272
K TGKT + + + ++ K+KIQ +P + L + GK +
Sbjct: 89 KNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTG 148
Query: 271 GRTLSDYNIQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPRAT 104
G TL D I+ T+H+V+ G ++ + + +A C + + L P T
Sbjct: 149 GTTLRDDIIRLNDTVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPEFT 204
>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 541
Score = 25.0 bits (52), Expect = 5.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 353 IFDSVGSFHLQCNGLPRKGFDEYL 424
IF VG+F C+ L ++GF E L
Sbjct: 43 IFPGVGNFGFVCDSLAKQGFLEPL 66
>SPCC1753.02c |git3||G-protein coupled receptor
Git3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 24.6 bits (51), Expect = 7.4
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +3
Query: 342 LALTFSIVSEASTSNVMVFPVRVLTNICIVLLL 440
L TF++ STS++++ R L N+ I++++
Sbjct: 4 LDYTFNVSDATSTSSIIIVSRRELANLRIMVII 36
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 24.6 bits (51), Expect = 7.4
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 460 LSKHVFHRSNTMQIFVKTLTGKTITLE-VEASDTIENVKAKIQDKEGIPP 314
LSK VF+ + + T+ G +++E V+ ++ N + + +PP
Sbjct: 346 LSKRVFYSVYVLACYTSTIVGLPLSIEDVDIDQSLPNSFDFTLENDQVPP 395
>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 24.6 bits (51), Expect = 7.4
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Frame = -2
Query: 406 LTGKTITLEVEASDTIENVKAKIQDKEGIP---PDQQRLIFAGKQLEDGRTLSDYNIQKE 236
L G T EV T+ + + +G P P + I A +G TL+ YN
Sbjct: 94 LKGPERTSEVSLPQTVNLSEISNNNDKGQPTNTPPVRSTIVAPSLYSEGSTLNHYNNGSH 153
Query: 235 STLH 224
LH
Sbjct: 154 QVLH 157
>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 24.2 bits (50), Expect = 9.8
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -3
Query: 264 LFQTITSRKNPHFTW 220
LFQT + KNPH W
Sbjct: 117 LFQTDMNEKNPHDLW 131
>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 308
Score = 24.2 bits (50), Expect = 9.8
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -2
Query: 358 ENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 239
E ++Q++ + P+Q R+ + GKQ D + D +QK
Sbjct: 252 EQYTERVQNEVTLSPEQLRIQYVGKQ--DPKKHLDAEVQK 289
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 24.2 bits (50), Expect = 9.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 274 DGRTLSDYNIQKESTLHLVLRLR 206
DG TL++ N HL++RL+
Sbjct: 432 DGETLNEINTNNPEREHLIVRLK 454
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,986,075
Number of Sequences: 5004
Number of extensions: 41134
Number of successful extensions: 124
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -