Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12j24
(832 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800 33 0.21
02_02_0310 - 8842286-8843314 32 0.64
10_06_0171 + 11466934-11466990,11467073-11468312,11468450-114685... 30 2.0
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600... 30 2.6
12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192 29 4.5
09_06_0240 + 21797458-21799369,21799636-21799784 29 4.5
08_01_1038 + 10540185-10540709 29 4.5
03_04_0035 - 16685674-16686376,16686594-16686640 29 4.5
02_02_0125 - 7026037-7027377 29 4.5
12_02_1155 + 26541137-26541142,26541244-26542623,26542730-265428... 29 6.0
11_02_0104 + 8329231-8329902 29 6.0
11_02_0093 - 8238947-8239615 29 6.0
02_05_0688 - 30918499-30919602 29 6.0
03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,970... 28 7.9
02_04_0260 - 21350060-21350269,21350544-21350604,21350834-213509... 28 7.9
01_06_0288 - 28228673-28228744,28228866-28229071,28229316-282295... 28 7.9
01_03_0176 - 13461331-13461573,13464880-13465106,13465214-13465535 28 7.9
>09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800
Length = 863
Score = 33.5 bits (73), Expect = 0.21
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -3
Query: 245 PESCCVKKSILSTFAGNNCTVDAA 174
P SCCV+K I+S F NCT D A
Sbjct: 53 PASCCVRKIIVSNFLPLNCTKDEA 76
>02_02_0310 - 8842286-8843314
Length = 342
Score = 31.9 bits (69), Expect = 0.64
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 435 HHLHNDDHQQEDCVRDDHAVTLAYRSTA-SQERDHEHYSPDDYEDPRTDSKM 587
HH H+D++++++ + D A R + + R H H+ DD+E + M
Sbjct: 194 HHHHHDENEEDEHEQADEASPAVERLISFHRRRHHHHHHEDDHEQREEGAPM 245
>10_06_0171 +
11466934-11466990,11467073-11468312,11468450-11468596,
11469650-11470140
Length = 644
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 399 DALAVGEEEDADHHLHNDDHQQEDCVRDDHAV 494
D + EE+D DHH H+ H D +HA+
Sbjct: 320 DTFRIAEEDDDDHHHHHHYHGDADDDDGEHAM 351
>06_03_1283 - 28957729-28959258,28959354-28959550,28959824-28960026,
28960097-28960424,28960524-28960661,28960765-28961020,
28961529-28961626,28963104-28963367,28964395-28964584
Length = 1067
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Frame = +3
Query: 408 AVGEEEDADHHLH--NDDHQQEDC 473
++ EE +DHH H N++H+ EDC
Sbjct: 969 SISIEESSDHHEHHHNEEHKAEDC 992
>12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192
Length = 283
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -3
Query: 215 LSTFAGNNCTVDAANPGCGPKI--GELYQKWNKPIAGVALGVACVEVVGALF 66
LST AG C + P CGP+ G Q+W + G VE++GALF
Sbjct: 111 LSTGAG--CAI-RPRPRCGPRARSGVAAQQWRHGRTVASEGRQSVELIGALF 159
>09_06_0240 + 21797458-21799369,21799636-21799784
Length = 686
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 215 LSTFAGNNCTVDAANPGCGPKIGELYQKWNK 123
++ N+C + A G G KI E+ Q WN+
Sbjct: 622 IAVLVKNHCANETAQDGLGFKIDEIVQAWNE 652
>08_01_1038 + 10540185-10540709
Length = 174
Score = 29.1 bits (62), Expect = 4.5
Identities = 22/57 (38%), Positives = 30/57 (52%)
Frame = +3
Query: 162 AAGIRGVDRAVVAGEGREDALLDAAGLGQRELTVVDSASVTAAFELSLQFREDSLGG 332
+ G+ G + AVV EGR +++ AG RE + SASV A + RED GG
Sbjct: 104 SVGVVGEEAAVVRMEGRGGSVVADAG-SAREAAALASASVATA---AGSAREDDGGG 156
>03_04_0035 - 16685674-16686376,16686594-16686640
Length = 249
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 390 ALLDALAVGEEEDADHHLHNDDHQQE 467
ALL L E++D DHH H+ H +
Sbjct: 224 ALLGQLEAEEDDDGDHHHHHHHHHHQ 249
>02_02_0125 - 7026037-7027377
Length = 446
Score = 29.1 bits (62), Expect = 4.5
Identities = 25/72 (34%), Positives = 35/72 (48%)
Frame = +3
Query: 162 AAGIRGVDRAVVAGEGREDALLDAAGLGQRELTVVDSASVTAAFELSLQFREDSLGGLVC 341
A+G+R A A A L AAG G EL +VD + AA LQ ++ +GG
Sbjct: 37 ASGLRASVSASTATSSTSMAQLVAAGGGIDELRLVDERAAVAA----LQQQQLPVGGCEV 92
Query: 342 VSVRSLFE*HAD 377
+R++ E AD
Sbjct: 93 EKLRAVAEAAAD 104
>12_02_1155 +
26541137-26541142,26541244-26542623,26542730-26542852,
26542996-26543168,26543332-26543572,26543931-26544023,
26544092-26544232,26544358-26544450,26544633-26544837,
26544993-26545078,26545532-26545620,26545736-26545820,
26545898-26545954,26546319-26546399,26547130-26547321
Length = 1014
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 507 DTRESLHGRHVRNLLAGDHHCASGDQRPPLHLRREHQ 397
++ + L G V N+L GDH A +QR +R+ Q
Sbjct: 763 NSTDDLSGPDVSNVLVGDHQPADAEQRAQKREQRQKQ 799
>11_02_0104 + 8329231-8329902
Length = 223
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 78 YHLNTSNTESNAGYRLVPFLVELADLGTAAGIRGV 182
+HLN S N GY V + AD GTAA G+
Sbjct: 63 FHLNASKYSGN-GYSTVCLKLHTADSGTAAAAGGI 96
>11_02_0093 - 8238947-8239615
Length = 222
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 78 YHLNTSNTESNAGYRLVPFLVELADLGTAAGIRGV 182
+HLN S N GY V + AD GTAA G+
Sbjct: 63 FHLNASKYSGN-GYSTVCLKLHAADSGTAAAAGGI 96
>02_05_0688 - 30918499-30919602
Length = 367
Score = 28.7 bits (61), Expect = 6.0
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +3
Query: 228 DAAGLGQREL-TVVDSASVTAAFELSLQFREDSLGGLVCVSVRSLFE*HADAIHNALLDA 404
+ G G EL T V ++ + FE+ FR D++ GL+ SVR+ E + N L D
Sbjct: 96 EGCGGGVGELRTAVAASFPSLRFEI-YPFRADAVTGLISASVRAALEAPLNYARNYLADL 154
Query: 405 L 407
L
Sbjct: 155 L 155
>03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,
9700145-9700235,9700698-9700759,9701256-9702962,
9703789-9703870,9703972-9704057,9704855-9704968,
9705113-9705163,9705261-9705358,9707084-9707546
Length = 1367
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +3
Query: 399 DALAVGEEEDADHHLHNDDHQQEDCVRDDHAVTLAYRSTASQERDHEHYSPDD 557
DA G E+A H H C RDD V + +S+ +D++ DD
Sbjct: 1209 DAKNCGSGEEAGDHDSERTHGTLPCSRDDEPVHVPSDFGSSKSQDNQRDEDDD 1261
>02_04_0260 -
21350060-21350269,21350544-21350604,21350834-21350901,
21351274-21351483,21351684-21351724,21351923-21351972,
21352084-21352172,21352265-21352339,21352539-21352656,
21352689-21352771,21352854-21352970,21353857-21354074,
21354184-21354241,21354356-21354508
Length = 516
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +1
Query: 514 QHPKNAITNITAPTTMKIHGPTARWVFSKSLTMVQFIRNATPIP 645
QH +N I MK H P +W+ L+ Q I++ P
Sbjct: 187 QHWENKIQASDENGMMKEHSPLGKWIIGMKLSGPQMIKHVQEFP 230
>01_06_0288 -
28228673-28228744,28228866-28229071,28229316-28229554,
28229649-28229705,28229787-28229873,28229963-28230507,
28231574-28231714
Length = 448
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Frame = -2
Query: 444 ASGDQRPPLHLRREH---QGEHYGWRRR 370
A+ + PL LRRE +GE GWRRR
Sbjct: 3 AAAREEQPLLLRREEGEEEGEEVGWRRR 30
>01_03_0176 - 13461331-13461573,13464880-13465106,13465214-13465535
Length = 263
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = -2
Query: 816 VNREGPCRRNLNEPRVKCLL*NRNKK*CSQHGMWNEFCEICAILLQPGRRAP 661
V+ GPC + + + C + C H +NEFC+ L PG AP
Sbjct: 168 VSAPGPCASSSAQRQTICAARRNFLRGCRAH-QFNEFCDYDLKLFIPGCTAP 218
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,996,085
Number of Sequences: 37544
Number of extensions: 443157
Number of successful extensions: 1778
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1772
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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