Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12j24
         (832 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    91   1e-20
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    24   1.5  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   2.6  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   3.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   6.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   6.0  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 91.1 bits (216), Expect = 1e-20
 Identities = 59/231 (25%), Positives = 100/231 (43%), Gaps = 2/231 (0%)
 Frame = -3

Query: 725 MGCGTSFVKYXXXXXXXXXXXXXXXXXXXXXXXLMNWTMVKDLLKTHLAVGPWIFIVVGA 546
           M CG   +KY                        +    V   ++T LA      IV+G+
Sbjct: 1   MSCGMGMIKYLLFIFNFVFAVCGLGILTLGVLIHLQILGVSKQIETGLAFPSITLIVLGS 60

Query: 545 VMFVIAFLGCCGAIRESHCMVVTYAXXXXXXXXXXXXXXXXLFTYGESIKESIMDGVGVL 366
           ++FVI+F GCCGAIRESHCM +T+A                 F   ++  +     +   
Sbjct: 61  IIFVISFFGCCGAIRESHCMTITFASFLLFILLVQIAVAVYAFIVVKN--DDNFRNISEK 118

Query: 365 FKKRSDANADEAAEAVFSE-LQRQFECCGNTGAINYGQFTLPESCCVKKSILSTFAGNNC 189
           +++  +     +    F + +Q+  +CCG     +Y    +P SCC      ++   N C
Sbjct: 119 YQEIFNGYFLNSESKDFIDFIQKNLQCCGVHSLSDYNDKPIPASCC------NSPENNTC 172

Query: 188 TV-DAANPGCGPKIGELYQKWNKPIAGVALGVACVEVVGALFALCLANSIR 39
           ++ ++   GC   + +  +        VA+ +A VE++G + ALCLANSI+
Sbjct: 173 SISNSYTNGCVEALKDTVKLAGTVFGSVAIAIAIVELIGIICALCLANSIK 223


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 362 KKRSDANADEAAEAVFSELQRQ 297
           +KR DA  DE+ EA+F  + RQ
Sbjct: 292 EKRDDAK-DESVEAIFQSILRQ 312


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -3

Query: 251 TLPESCCVKKSILSTFAGNNCTVDAANPGCGPKIGEL 141
           T  ESC V   I + + G N  +  A    G KI EL
Sbjct: 252 TFFESCGVADLIATCYGGRNRKICEAFVKTGKKISEL 288


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +1

Query: 127 FHFW*SSPILGPQP-GFAASTVQLLPAK 207
           F FW S  ++GP+P  F  +T  L+  K
Sbjct: 26  FDFWKSRGVVGPKPVPFFGTTKDLILVK 53


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 398 KESIMDGVGVLFKKRSDANADEAAEAVFSELQR 300
           K S+M   G+  +     + DE    VFS LQR
Sbjct: 96  KRSLMGAQGLSIRGLQINHEDETIRPVFSTLQR 128


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
 Frame = -3

Query: 134 KWNKPIAGVALGVACVEVVGALFALCL------ANSIRXHGQKVTLLI 9
           +WN   A     ++C+ +V  +   CL         +R  G+++T+++
Sbjct: 510 RWNSAFAIAPAVISCLGIVATMAVACLLFHHRDTPVVRASGRELTIIL 557


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
 Frame = -3

Query: 134 KWNKPIAGVALGVACVEVVGALFALCL------ANSIRXHGQKVTLLI 9
           +WN   A     ++C+ +V  +   CL         +R  G+++T+++
Sbjct: 600 RWNSAFAIAPAVISCLGIVATMAVACLLFHHRDTPVVRASGRELTIIL 647


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,422
Number of Sequences: 438
Number of extensions: 4242
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)