Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12j21
(875 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 30 0.50
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.66
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces... 28 1.5
SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|... 28 1.5
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 28 1.5
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi... 27 2.7
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 27 3.5
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom... 27 4.6
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 4.6
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 27 4.6
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 26 8.1
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 8.1
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 26 8.1
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 26 8.1
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 29.9 bits (64), Expect = 0.50
Identities = 16/69 (23%), Positives = 32/69 (46%)
Frame = -1
Query: 374 AFIHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILFTENEGVLLCSVDRPSIVKMLSRE 195
AF H F ++ + N +E N + P+L T+ L +D P ++++ +
Sbjct: 1380 AFDHQSFKDIIVHVAN-LELYYRALN-FYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKS 1437
Query: 194 FDTEALVNF 168
+T ++NF
Sbjct: 1438 ENTPLILNF 1446
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 29.5 bits (63), Expect = 0.66
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 16/123 (13%)
Frame = +1
Query: 160 SFSKFTKASVSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSVTTN--SILLV 333
S S +++SV + I + GLS ++ + + + +G+P +S VSVT N ++
Sbjct: 177 SSSSSSQSSVVSVNSEIFSYFGLSQQYVNYSTSRLCVVGTPRANMSTVSVTNNGSAVSNY 236
Query: 334 KLVTSGW---NLLCIKANVLN-------TTAAICRVSAL----FLNISNSGWVISRVLSI 471
+ T+GW N C+ V N T A + VS L N + S + ++ S
Sbjct: 237 TVNTNGWTSSNFKCVDDVVANIFGLDFYTAAVLSEVSILRSFALCNATTSSSLFRQIASY 296
Query: 472 AMY 480
+Y
Sbjct: 297 GVY 299
>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 374
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +3
Query: 564 GFLDLFI-AVYNFGDRSNFVAFDTFHF-YTLIYNIC 665
GF+ + I A+ F DRS VAF +F + L+Y IC
Sbjct: 120 GFIPVLIKAMKQFKDRSENVAFTSFRYALFLVYYIC 155
>SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 241
Score = 28.3 bits (60), Expect = 1.5
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = -1
Query: 431 IFRNKADTRQIAAVVFSTLAFIHNRFHPLV---TNFTNKMEFVVTETNDTS 288
IFR + R V AFI N++ PLV T++TN V +TN S
Sbjct: 93 IFRFNLNHRGYLEVKSGFRAFIENKYSPLVFHATSWTNGFSIDVQKTNPIS 143
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -1
Query: 182 ALVNFENDNCNVRIAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFT 39
+L NF++DNC ++ + S R N S+ S D+DL +T
Sbjct: 223 SLANFQSDNCKLKSHNSL-PSIRTNVRYSNSKPSTPLSPEDVDLGTYT 269
>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 680
Score = 27.5 bits (58), Expect = 2.7
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = +1
Query: 451 ISRVLSIAMYLLSANLIFRVS*LSKLLRFFKSNSANS*VFWIFSSLFTISVTVRTLLHLT 630
+ R+LSIA +LLS + + R+ + + N+ S V + T SV V+ L +
Sbjct: 14 LKRILSIAFFLLSLSTLLRIVNAQQ----YVDNNIGSMVLSDYDFAETPSVRVQRALEIL 69
Query: 631 RFIFIHLSTTF 663
R+ + T+
Sbjct: 70 RYYYEQEDVTY 80
>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 359
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 143 IAKTFGASKRKNTTRSDDYESNKQP 69
IAK G+SKRK+ + YE++K P
Sbjct: 116 IAKFLGSSKRKSKELIEAYEASKTP 140
>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 409
Score = 26.6 bits (56), Expect = 4.6
Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 5/117 (4%)
Frame = -1
Query: 587 SDEKIQKTYELAEFDLKNLSSLESYETL-----KIKLALSKYMAMLSTLEMTQPLLEIFR 423
++ I+ + L L++L+ L+S L + L +++ S + + +LEI
Sbjct: 239 NENTIEDFFGLVRARLESLNLLDSDSELLCEFPDLSLKINEDNVYASQIHLVD-ILEILT 297
Query: 422 NKADTRQIAAVVFSTLAFIHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILFTENE 252
D + ++VFST R++ LV ++ + E D IL N+
Sbjct: 298 VHCDLEESFSIVFSTQPRFIARYNELVQAVSSSSNSEIDEVEDAETIDSKILEKRND 354
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.6 bits (56), Expect = 4.6
Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Frame = +1
Query: 160 SFSKFTKASVSNSRLSILTIDGLSTEHNSTPSFSVNKMGS--PGMLVSLVSVTTNSILLV 333
S S + +S S+S S+ S+ H+S+ S S + S P S ++ ++S +
Sbjct: 192 SSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFIS 251
Query: 334 KL-VTSGWNLLCIKANVLNTTAAICRVSALFLNIS--NSGWVISRVLS-IAMYLLSANLI 501
+ VT + + V ++TAA+ ++ N + N+G ++ V+ +A ++ A I
Sbjct: 252 TVTVTPSSSSSSTSSEVPSSTAALALNASKASNHTSLNAGAIVGIVIGCVAFAVVMALCI 311
Query: 502 F 504
F
Sbjct: 312 F 312
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 4.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 282 GNACVISFSDHKLHFVSKISNK 347
G+AC +S + K+H ++ ISN+
Sbjct: 230 GSACAVSDDEGKIHVINDISNE 251
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 8.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +3
Query: 279 SGNACVISFSDHKLHFVSKISNKW 350
SGN +S D+K++ + NKW
Sbjct: 266 SGNILAVSCGDNKVYLFKESQNKW 289
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 136 LAIRTLQLSFSKFTKASVSNSRLSILTIDGLSTEHNSTP 252
L I+ QLSFS+ S + SRL +T+ + TP
Sbjct: 889 LIIKEEQLSFSRLQLLSRATSRLRTMTLSVFNNSGTLTP 927
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 318 LHFVSKISN-KWMESIVYKS*CAKHHGGNLPSVCFVSKYFQQRLGHFQGAEHSHVF 482
L +++ +S+ KW+E + K C K+ N S K F + +G+ A + +
Sbjct: 157 LQYITGVSDTKWLEFVSAKGQCPKYLYWNNKSYLLKKKRFLKEVGNSPSAVYCRYY 212
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/43 (25%), Positives = 26/43 (60%)
Frame = +1
Query: 301 VSVTTNSILLVKLVTSGWNLLCIKANVLNTTAAICRVSALFLN 429
+S+ TNS L VKL ++ + C+ + + ++ ++ ++ L L+
Sbjct: 905 ISMQTNSSLSVKLNSNSNTITCVVSGTMVSSPSLANITILGLS 947
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,166,579
Number of Sequences: 5004
Number of extensions: 61892
Number of successful extensions: 207
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -