Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12j18
         (435 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071683-1|AAL49305.2|  147|Drosophila melanogaster RH08962p pro...    96   2e-20
AE014297-2878|AAN13838.1|  132|Drosophila melanogaster CG15697-P...    96   2e-20
AE014297-2877|AAF55815.1|  132|Drosophila melanogaster CG15697-P...    96   2e-20

>AY071683-1|AAL49305.2|  147|Drosophila melanogaster RH08962p
           protein.
          Length = 147

 Score = 95.9 bits (228), Expect = 2e-20
 Identities = 54/115 (46%), Positives = 66/115 (57%), Gaps = 1/115 (0%)
 Frame = -1

Query: 396 MQLHIRGQST-HVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPXXXXXXXXXXXX 220
           MQL +RG  T   L+V+   +I  +K ++  +     E+ +L   G              
Sbjct: 16  MQLFVRGLETIEALEVSQDATIAGVKNQLAQIHGFNAEEFSLDCEGITLANETPVTALSS 75

Query: 219 XXXXLTVPLLGGKVHGSLARAGKVKGQTPKVEXXXXXXXKTGRAKRRIQYNRRFV 55
               L +P+LGGKVHGSLARAGKVKGQTPKVE       KTGRAKRRIQYNRRFV
Sbjct: 76  FELDLNIPMLGGKVHGSLARAGKVKGQTPKVEKQEKKKKKTGRAKRRIQYNRRFV 130



 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = -2

Query: 47  VQTFGRRRGPNSNS 6
           VQ FGRRRGPN+NS
Sbjct: 133 VQGFGRRRGPNANS 146


>AE014297-2878|AAN13838.1|  132|Drosophila melanogaster CG15697-PB,
           isoform B protein.
          Length = 132

 Score = 95.9 bits (228), Expect = 2e-20
 Identities = 54/115 (46%), Positives = 66/115 (57%), Gaps = 1/115 (0%)
 Frame = -1

Query: 396 MQLHIRGQST-HVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPXXXXXXXXXXXX 220
           MQL +RG  T   L+V+   +I  +K ++  +     E+ +L   G              
Sbjct: 1   MQLFVRGLETIEALEVSQDATIAGVKNQLAQIHGFNAEEFSLDCEGITLANETPVTALSS 60

Query: 219 XXXXLTVPLLGGKVHGSLARAGKVKGQTPKVEXXXXXXXKTGRAKRRIQYNRRFV 55
               L +P+LGGKVHGSLARAGKVKGQTPKVE       KTGRAKRRIQYNRRFV
Sbjct: 61  FELDLNIPMLGGKVHGSLARAGKVKGQTPKVEKQEKKKKKTGRAKRRIQYNRRFV 115



 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = -2

Query: 47  VQTFGRRRGPNSNS 6
           VQ FGRRRGPN+NS
Sbjct: 118 VQGFGRRRGPNANS 131


>AE014297-2877|AAF55815.1|  132|Drosophila melanogaster CG15697-PA,
           isoform A protein.
          Length = 132

 Score = 95.9 bits (228), Expect = 2e-20
 Identities = 54/115 (46%), Positives = 66/115 (57%), Gaps = 1/115 (0%)
 Frame = -1

Query: 396 MQLHIRGQST-HVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPXXXXXXXXXXXX 220
           MQL +RG  T   L+V+   +I  +K ++  +     E+ +L   G              
Sbjct: 1   MQLFVRGLETIEALEVSQDATIAGVKNQLAQIHGFNAEEFSLDCEGITLANETPVTALSS 60

Query: 219 XXXXLTVPLLGGKVHGSLARAGKVKGQTPKVEXXXXXXXKTGRAKRRIQYNRRFV 55
               L +P+LGGKVHGSLARAGKVKGQTPKVE       KTGRAKRRIQYNRRFV
Sbjct: 61  FELDLNIPMLGGKVHGSLARAGKVKGQTPKVEKQEKKKKKTGRAKRRIQYNRRFV 115



 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = -2

Query: 47  VQTFGRRRGPNSNS 6
           VQ FGRRRGPN+NS
Sbjct: 118 VQGFGRRRGPNANS 131


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,354,356
Number of Sequences: 53049
Number of extensions: 293317
Number of successful extensions: 645
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1376136036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)