Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12j14
         (736 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0770 + 5912412-5912476,5913759-5913779,5914015-5914638,591...    29   2.9  
09_02_0235 + 6122145-6122206,6122408-6122417,6123515-6123549,612...    29   3.8  
09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539     28   6.7  
07_01_0618 + 4577417-4577430,4577838-4577874,4578070-4578173,457...    28   6.7  
06_01_0915 - 7054701-7055809,7056062-7056359                           28   6.7  
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204...    28   8.8  
01_01_0509 - 3713109-3713244,3713689-3713733,3713959-3714015,371...    28   8.8  

>07_01_0770 +
           5912412-5912476,5913759-5913779,5914015-5914638,
           5915264-5915439,5915526-5916124
          Length = 494

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +1

Query: 538 TSKKRNSSRDTRXQNVFGFVVSRMLLVVA 624
           +S  R  SRD R +N+FGF VS +L+ +A
Sbjct: 18  SSTTRFMSRDIRAKNIFGFSVSLILINLA 46


>09_02_0235 +
           6122145-6122206,6122408-6122417,6123515-6123549,
           6124422-6124842,6124978-6125412
          Length = 320

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -1

Query: 580 FVXVCRATNCVF*T*PTPERIEVVLAIN 497
           FV V ++TNC+    P PE I+ VLAI+
Sbjct: 219 FVPVLQSTNCLMEPLPIPEPIKEVLAIS 246


>09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539
          Length = 1908

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
 Frame = -3

Query: 584  TFCXRVSRDELRFLDVTNARTHRGGVGDQLFNNYSGFLQNLIRRAVAPEYLQID-TEELR 408
            T+C       L+    T  RT R  +G+QL  N   ++ +L+ +    E L  D  E   
Sbjct: 819  TYCYTTMPFGLKNAGPTFQRTTRISLGNQLGRNVEAYVDDLVVKTRNQEMLLSDLAETFE 878

Query: 407  FRNSATCIIDETGLVXSVPDGPELYNPIRSSDIMKSQPNRLQ 282
               SA   ++    V  VP G +L   + S+  +++ P +++
Sbjct: 879  SLRSARIKLNPDKCVFGVPAG-KLLGFLVSARGIEANPEKIR 919


>07_01_0618 +
           4577417-4577430,4577838-4577874,4578070-4578173,
           4578512-4578707,4579559-4579628,4579849-4579952,
           4580296-4580335,4581016-4581070,4581418-4581426,
           4582026-4582157,4582544-4582613,4583029-4583086,
           4583173-4583228,4583315-4583470,4583589-4583700,
           4583782-4583923,4584141-4584216,4584306-4584401,
           4584509-4584637
          Length = 551

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 366 QTRFVNYTRGAISKSQFLRVDLQVLGR 446
           Q RF+NY    ++  QFL++  Q+ GR
Sbjct: 313 QKRFINYLVNQLAAHQFLKIACQIEGR 339


>06_01_0915 - 7054701-7055809,7056062-7056359
          Length = 468

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = -3

Query: 521 HRGGVGDQLFNNYSGFLQNLIRRAVAPEYLQIDTEELRFRNSA 393
           H   VGD L  N +  L  L+     PE +  D EE RFR  A
Sbjct: 177 HLAFVGDSLARNQAESLVCLLASRSTPELVHRDGEENRFRRWA 219


>01_05_0292 +
           20518668-20519090,20519213-20519281,20520204-20520473,
           20520734-20521084,20521251-20521528,20522755-20523099,
           20523346-20523911,20525155-20525528
          Length = 891

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -3

Query: 431 QIDTEELRFRNSATCIIDETGLVXSVPDGPELYNPIRSSDIMKSQPNRL 285
           QI  E ++F  S+   I  T L    P GP+L +  R  D++ + P RL
Sbjct: 237 QILEEAVKFGRSSR--ISSTCLYGGAPKGPQLRDLDRGVDVVVATPGRL 283


>01_01_0509 -
           3713109-3713244,3713689-3713733,3713959-3714015,
           3714088-3714438,3714585-3714862,3714939-3715289,
           3715378-3715647,3716035-3716103,3716194-3716304,
           3716503-3716583,3716825-3716914,3717032-3717262
          Length = 689

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -3

Query: 431 QIDTEELRFRNSATCIIDETGLVXSVPDGPELYNPIRSSDIMKSQPNRL 285
           QI  E  +F  S+   I    L    P GP+L +  R +DI+ + P RL
Sbjct: 267 QIQDEAKKFGRSSR--ISSVCLYGGAPKGPQLRDLERGADIVVATPGRL 313


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,572,350
Number of Sequences: 37544
Number of extensions: 344841
Number of successful extensions: 852
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)