Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12j14
         (736 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00040-5|AAA50666.1|  934|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U39645-9|AAM51511.1|  297|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U39645-8|AAA80361.1|  414|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AF078785-11|AAC27097.2|  294|Caenorhabditis elegans Hypothetical...    28   6.0  
AF002198-10|AAF99937.1|  471|Caenorhabditis elegans Hypothetical...    28   6.0  
Z92834-1|CAB07382.1|  564|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AF003385-1|AAB54243.1|  884|Caenorhabditis elegans Hypothetical ...    28   7.9  

>U00040-5|AAA50666.1|  934|Caenorhabditis elegans Hypothetical
           protein C18H2.4 protein.
          Length = 934

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -3

Query: 710 KRRLTLYATI*KYTEXFTSGTXRVIHSVYATTRSILDTTN 591
           K + T+Y T+ +++E    GT   +H VYA+   I D TN
Sbjct: 801 KYKGTVYGTVIQWSEAMAKGTMPYLHGVYASI-LIEDKTN 839


>U39645-9|AAM51511.1|  297|Caenorhabditis elegans Hypothetical
           protein C14F11.1b protein.
          Length = 297

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -3

Query: 440 EYLQIDTEELRFRNSATCIIDETGLVXSVPDGPE 339
           ++  +D ++ R+ + +TC  DETG +  +   PE
Sbjct: 154 KFAGVDVKQYRYYDKSTCGFDETGALADIAQIPE 187


>U39645-8|AAA80361.1|  414|Caenorhabditis elegans Hypothetical
           protein C14F11.1a protein.
          Length = 414

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -3

Query: 440 EYLQIDTEELRFRNSATCIIDETGLVXSVPDGPE 339
           ++  +D ++ R+ + +TC  DETG +  +   PE
Sbjct: 154 KFAGVDVKQYRYYDKSTCGFDETGALADIAQIPE 187


>AF078785-11|AAC27097.2|  294|Caenorhabditis elegans Hypothetical
           protein C04E12.12 protein.
          Length = 294

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = +3

Query: 219 VSAKRSVQLTCVAFKFQNVSNLQTIGLTFHDVTASYRVVQLGAVGHRXHQTRFVNYT 389
           +S +  +  T   +K + V N++ +GL     T + RV ++ A G   ++T+ VNY+
Sbjct: 23  ISGRVVLSTTKEKYKARAV-NIKILGLAHTSWTDTERVRKVNAEGKEAYETKIVNYS 78


>AF002198-10|AAF99937.1|  471|Caenorhabditis elegans Hypothetical
           protein F35F10.12 protein.
          Length = 471

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = +3

Query: 219 VSAKRSVQLTCVAFKFQNVSNLQTIGLTFHDVTASYRVVQLGAVGHRXHQTRFVNYT 389
           +S +  +  T   +K + V N++ +GL     T + RV ++ A G   ++T+ VNY+
Sbjct: 23  ISGRVVLSTTKEKYKARAV-NIKILGLAHTSWTDTERVRKVNAEGKETYETKIVNYS 78


>Z92834-1|CAB07382.1|  564|Caenorhabditis elegans Hypothetical
           protein F39B2.1 protein.
          Length = 564

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 621 NYKKHSRHHKPEHVLXACVARRIAFFRRDQ 532
           N ++H+RHH  E VL AC      F RRD+
Sbjct: 308 NLRRHARHHSGEKVL-ACPFCARFFSRRDK 336


>AF003385-1|AAB54243.1|  884|Caenorhabditis elegans Hypothetical
           protein R08F11.1 protein.
          Length = 884

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/55 (30%), Positives = 22/55 (40%)
 Frame = -3

Query: 443 PEYLQIDTEELRFRNSATCIIDETGLVXSVPDGPELYNPIRSSDIMKSQPNRLQI 279
           P    I TEE       TC+ D  G    +    E Y  + S D + S+P  L I
Sbjct: 293 PVTYAIGTEEKNGSKVTTCLFDPNGTGGRLWSDLEAYGHLSSYDHLPSKPKELGI 347


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,358,721
Number of Sequences: 27780
Number of extensions: 306263
Number of successful extensions: 784
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)