Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12j11
(252 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 28 0.16
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 27 0.38
SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyce... 26 0.66
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 26 0.88
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 25 1.2
SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 1.5
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch... 25 2.0
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 25 2.0
SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual 24 2.7
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 24 3.5
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 24 3.5
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po... 23 4.7
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran... 23 4.7
SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransfer... 23 6.2
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 23 6.2
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 23 8.2
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce... 23 8.2
SPCC584.14 |mug160||conserved eukaryotic protein|Schizosaccharom... 23 8.2
>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 28.3 bits (60), Expect = 0.16
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 38 RNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQYG 166
R +A Y+ + LGG++ S+ EK F + N DV+ + G
Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 27.1 bits (57), Expect = 0.38
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -3
Query: 193 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASI 98
CY P + + L ++I+T+L DN ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199
>SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 170
Score = 26.2 bits (55), Expect = 0.66
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -3
Query: 91 SLPSSEIYRQLVDSRHVSSDSFGVY 17
+L S I+R + S HVSS S GVY
Sbjct: 2 TLLDSSIFRFRLSSLHVSSRSLGVY 26
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 25.8 bits (54), Expect = 0.88
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 27 KESEETWRESTNWR*ISEEG 86
KE E W + NW+ SEEG
Sbjct: 809 KEELEAWTRAFNWQKASEEG 828
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 1.2
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 53 IYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVV 154
++Q A+ LG RS RC KSSF+ + DVV
Sbjct: 33 LHQQAL-LGRNGRSSKRCSPKSSFIRNSPKIDVV 65
>SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 320
Score = 25.0 bits (52), Expect = 1.5
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -3
Query: 145 RTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVSSDSFGVY 17
R +LKD LS S+ SLPS Q+ + +S + Y
Sbjct: 57 RKILKDVSLKRLSKSLDRSLPSENTIDQISFNHAMSEEDASGY 99
>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 24.6 bits (51), Expect = 2.0
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 202 DPSCYFSTPPFDTVLYDNIRT 140
DP+ Y PFDTV D + T
Sbjct: 706 DPAAYDKISPFDTVDIDGLTT 726
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 24.6 bits (51), Expect = 2.0
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -2
Query: 128 QQNCS-SLCIYSSFSPFLRDLPPVGRFSP 45
Q+ C+ LC YS SP R+LP F P
Sbjct: 495 QRECTICLCEYSEESPLYRELPCHHIFHP 523
>SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 24.2 bits (50), Expect = 2.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 70 YRQLVDSRHVSSDSFGVYVKS 8
YRQLVD R ++ D F + K+
Sbjct: 34 YRQLVDGRELTLDDFISHAKA 54
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 23.8 bits (49), Expect = 3.5
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 246 PSRFLLS*APESTS-SIPPATFQLLPSIPYCTTTS 145
P+ L+ STS S PP T L+ ++P TTT+
Sbjct: 172 PATVLIVTTSGSTSTSCPPPTTILIVTVPTTTTTT 206
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 23.8 bits (49), Expect = 3.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 166 TVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLV 56
TVL + I+ V+K + A+ +LP +Y QL+
Sbjct: 360 TVLSNGIKKVIKTITASSRHANYAKALPRCSVYLQLL 396
>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 433
Score = 23.4 bits (48), Expect = 4.7
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = -3
Query: 208 VFDPSCYFSTPPF 170
+FDP C ++ PP+
Sbjct: 260 IFDPDCAYAFPPY 272
>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
transcription factor Ams2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 697
Score = 23.4 bits (48), Expect = 4.7
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -3
Query: 202 DPSCYFSTPPFDTVL 158
D CYF TPP T L
Sbjct: 579 DLECYFRTPPKPTTL 593
>SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 209
Score = 23.0 bits (47), Expect = 6.2
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +2
Query: 23 SKGVGRNMARIY 58
SKG+GRN+A Y
Sbjct: 129 SKGIGRNLANAY 140
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 23.0 bits (47), Expect = 6.2
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -2
Query: 110 LCIYSSFSPFLRDLPPVGRFSPCF 39
LC+ S+F P +R P+ S F
Sbjct: 520 LCVTSAFMPAIRSPSPINFLSSMF 543
>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 314
Score = 22.6 bits (46), Expect = 8.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 142 TVLKDNKTALLSASIQASLPSSEIYRQLVDSR 47
TV +++ + S A L SEIY+QL D R
Sbjct: 163 TVYRNHLLTCETDSALAQLFKSEIYQQLSDFR 194
>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 22.6 bits (46), Expect = 8.2
Identities = 9/37 (24%), Positives = 18/37 (48%)
Frame = +2
Query: 14 YVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSF 124
Y+D + N ++ +L + +E + CR +S F
Sbjct: 144 YIDQDKMHENWKKLQELGILYADKESYRHMCRFESGF 180
>SPCC584.14 |mug160||conserved eukaryotic
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 431
Score = 22.6 bits (46), Expect = 8.2
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -3
Query: 169 DTVLYDNIRTVLKDNKTALLSASIQASLPSSEI 71
D V YD ++ D+ ++L + S PSS I
Sbjct: 253 DYVSYDTTISLKNDDSSSLGDMEFETSQPSSSI 285
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 979,195
Number of Sequences: 5004
Number of extensions: 15869
Number of successful extensions: 64
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 47431474
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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