Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12j11
(252 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81593-10|CAI94504.1| 349|Caenorhabditis elegans Hypothetical p... 27 1.3
AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich ... 27 1.8
AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related... 27 1.8
Z75542-2|CAA99862.2| 712|Caenorhabditis elegans Hypothetical pr... 26 3.1
Z69302-8|CAA93261.3| 420|Caenorhabditis elegans Hypothetical pr... 26 4.1
U80954-5|AAB38096.1| 822|Caenorhabditis elegans Hypothetical pr... 26 4.1
AC024857-1|AAK31566.2| 869|Caenorhabditis elegans Temporarily a... 26 4.1
U42848-2|AAA83608.2| 315|Caenorhabditis elegans Hypothetical pr... 25 7.1
AF100663-2|AAC68981.2| 532|Caenorhabditis elegans Udp-glucurono... 25 7.1
Z77665-3|CAB01218.1| 103|Caenorhabditis elegans Hypothetical pr... 25 9.4
U41534-7|AAB47599.3| 1743|Caenorhabditis elegans Hypothetical pr... 25 9.4
AF100663-3|AAC68980.1| 529|Caenorhabditis elegans Udp-glucurono... 25 9.4
AF068708-1|AAC17759.1| 452|Caenorhabditis elegans Hypothetical ... 25 9.4
AF040655-6|AAB95043.2| 296|Caenorhabditis elegans Serpentine re... 25 9.4
>Z81593-10|CAI94504.1| 349|Caenorhabditis elegans Hypothetical
protein T20B3.15 protein.
Length = 349
Score = 27.5 bits (58), Expect = 1.3
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -3
Query: 208 VFDPSCYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVSS 35
++D +C F+ + + YD I T + LS S AS+ S R L+ + V S
Sbjct: 235 IYDETCVFNYDNYCYIPYDQINTSKQGQSICELSGSNLASIRSGNENRFLMSTVSVFS 292
>AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich
repeats, ras-likedomain, kinase protein 1 protein.
Length = 2395
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 63 WR*ISEEGREA*IDAERRAVLLSLRTVLMLSYNTVS 170
W + GR + A L SLRT+LMLS N+++
Sbjct: 50 WNRVDRHGRTPLMLAAHNGKLDSLRTILMLSPNSLN 85
>AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related
kinase protein.
Length = 2393
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 63 WR*ISEEGREA*IDAERRAVLLSLRTVLMLSYNTVS 170
W + GR + A L SLRT+LMLS N+++
Sbjct: 50 WNRVDRHGRTPLMLAAHNGKLDSLRTILMLSPNSLN 85
>Z75542-2|CAA99862.2| 712|Caenorhabditis elegans Hypothetical
protein F55D12.2 protein.
Length = 712
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = -3
Query: 130 DNKTALLSASIQASLPSSEIYRQLVDSRHVSSDSFGVYVKS 8
+N +LL A + +LP S ++ L+D+RH+ Y+++
Sbjct: 42 ENLVSLL-ALLSDTLPPSTLFTVLLDTRHIQLKQLKFYLRA 81
>Z69302-8|CAA93261.3| 420|Caenorhabditis elegans Hypothetical
protein F40F8.5 protein.
Length = 420
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 1 GIKILRRLQRSRKKHGENLPTGGRSRRKGE 90
G + R RKKHG ++ GR RR G+
Sbjct: 97 GNDMKHRENMDRKKHGTHVDHHGRVRRNGD 126
>U80954-5|AAB38096.1| 822|Caenorhabditis elegans Hypothetical
protein T07F8.1 protein.
Length = 822
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 22 LQRSRKKHGENLPTGGRSRRKGEKLE 99
+ + RK+HG+NL G + +K ++LE
Sbjct: 2 VSKKRKEHGKNLGVLGPAAKKQKRLE 27
>AC024857-1|AAK31566.2| 869|Caenorhabditis elegans Temporarily
assigned gene nameprotein 305 protein.
Length = 869
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 7 KILRRLQRSRKKHGENLPTGGRSRRKGEKLE*MQREEQF 123
++L L +K GE +P GRS K+E M + F
Sbjct: 761 QLLNTLNEMKKALGEGVPKSGRSLNSTCKIETMTNKTPF 799
>U42848-2|AAA83608.2| 315|Caenorhabditis elegans Hypothetical
protein C31H1.5 protein.
Length = 315
Score = 25.0 bits (52), Expect = 7.1
Identities = 16/68 (23%), Positives = 29/68 (42%)
Frame = -3
Query: 211 YVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVSSD 32
Y D + +T T+ TV + KT ++++ + E + + H D
Sbjct: 247 YKEDTTTTSTTDTTTTISTTKNTTVTQKPKTNTTNSTVTIEETTLE-EKTIATGNHTEMD 305
Query: 31 SFGVYVKS 8
FGVY++S
Sbjct: 306 EFGVYIES 313
>AF100663-2|AAC68981.2| 532|Caenorhabditis elegans
Udp-glucuronosyltransferase protein19 protein.
Length = 532
Score = 25.0 bits (52), Expect = 7.1
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +2
Query: 68 VDLGGRERSLNRCRE-KSSFV-VLKNRPDVVVQYGIEGRS*KVAGGIEDVDSGAYDRRN 238
+ G RS++ E K++F+ V+K+ PD + E + K GIE+V G + +N
Sbjct: 301 ISFGSNARSVDMPLEYKNTFLQVIKSMPDTTFIWKYEDLNDKFTEGIENVYLGDWLPQN 359
>Z77665-3|CAB01218.1| 103|Caenorhabditis elegans Hypothetical
protein K02E11.4 protein.
Length = 103
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -3
Query: 112 LSASIQASLPSSEIYRQLVDSRHVSS 35
++A++ SLP S YR+LV+ + V S
Sbjct: 37 VNATVTISLPVSANYRRLVNKKKVPS 62
>U41534-7|AAB47599.3| 1743|Caenorhabditis elegans Hypothetical
protein C16A3.3 protein.
Length = 1743
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 104 CREKSSFVVLKNRPDVVVQYGIEGRS 181
C++ S +VL PD+V IE R+
Sbjct: 304 CQQNSKILVLNAHPDIVAASRIEKRT 329
>AF100663-3|AAC68980.1| 529|Caenorhabditis elegans
Udp-glucuronosyltransferase protein20 protein.
Length = 529
Score = 24.6 bits (51), Expect = 9.4
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 68 VDLGGRERSLNRCRE-KSSFV-VLKNRPDVVVQYGIEGRS*KVAGGIEDVDSGAYDRRN 238
+ G RS++ E K +F+ V+K+ PD + E + K GIE+V G + +N
Sbjct: 298 ISFGSNARSVDMPLEYKKTFLQVIKSMPDTTFIWKYEDLNDKFTEGIENVYLGDWLPQN 356
>AF068708-1|AAC17759.1| 452|Caenorhabditis elegans Hypothetical
protein C18G1.7 protein.
Length = 452
Score = 24.6 bits (51), Expect = 9.4
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -3
Query: 199 PSCYFSTPPFDTVLYD-NIRTVLKDNKTALLSASIQASLPSSEIYRQLVD 53
P+CY+S+ F+ LY+ + +LK K +L L ++ +L D
Sbjct: 102 PNCYYSSHVFEVSLYNVPLEELLKIRKVNILINGKVIDLNIKQVMPKLKD 151
>AF040655-6|AAB95043.2| 296|Caenorhabditis elegans Serpentine
receptor, class x protein112 protein.
Length = 296
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 65 AVDLGGRERSLNRCREKSSFVVLKNRPDVVVQYGIEG 175
AVD S C +S +++ DVVV +G++G
Sbjct: 232 AVDAANNAASTKYCENQSCIMLISMSVDVVV-FGVDG 267
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,469,282
Number of Sequences: 27780
Number of extensions: 91007
Number of successful extensions: 309
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 219801160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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