Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12j11
         (252 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   3.1  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    20   4.2  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    19   7.3  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    19   7.3  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    19   7.3  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           19   7.3  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    19   9.6  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.6 bits (41), Expect = 3.1
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 154 DNIRTVLKDNKTALLSASIQASLPS-SEIYRQL 59
           D IRT  KD+ +++     +A++P  +E +R L
Sbjct: 330 DEIRTRYKDSSSSVEGWENRATIPELNEEFRDL 362


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 4.2
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = -1

Query: 219 PESTSSIPPATFQLLPSIPYCTTTSGRF 136
           P+S  S   A   L+PS P C      F
Sbjct: 391 PKSIKSGDAAIVMLVPSKPMCAEAFQEF 418


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 19.4 bits (38), Expect = 7.3
 Identities = 6/18 (33%), Positives = 9/18 (50%)
 Frame = +3

Query: 24  PKESEETWRESTNWR*IS 77
           P    + W E  NW+ I+
Sbjct: 96  PPNKLQQWNEDLNWQPIA 113


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 19.4 bits (38), Expect = 7.3
 Identities = 6/18 (33%), Positives = 9/18 (50%)
 Frame = +3

Query: 24  PKESEETWRESTNWR*IS 77
           P    + W E  NW+ I+
Sbjct: 111 PPNKLQQWNEDLNWQPIA 128


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 19.4 bits (38), Expect = 7.3
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 101 YSSFSPFLRDLPPVGRF 51
           Y ++      LPPVG+F
Sbjct: 45  YEAYEGIPYALPPVGKF 61


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 19.4 bits (38), Expect = 7.3
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 101 YSSFSPFLRDLPPVGRF 51
           Y ++      LPPVG+F
Sbjct: 45  YEAYEGIPYALPPVGKF 61


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +3

Query: 15  T*TPKESEETWRESTNW 65
           T TP++++E   +  NW
Sbjct: 174 TATPQQAQEVHEKLRNW 190


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,398
Number of Sequences: 438
Number of extensions: 1451
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4527252
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)