Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12j10
         (294 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032626-25|CAH10813.1|  406|Caenorhabditis elegans Hypothetical...    25   7.1  
AL032626-24|CAA21530.1|  499|Caenorhabditis elegans Hypothetical...    25   7.1  
Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical pr...    25   9.4  

>AL032626-25|CAH10813.1|  406|Caenorhabditis elegans Hypothetical
          protein Y37D8A.11b protein.
          Length = 406

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 70 RDPYCSHDRGWKCR 29
          ++ YC H +GW CR
Sbjct: 40 KECYCVHFKGWNCR 53


>AL032626-24|CAA21530.1|  499|Caenorhabditis elegans Hypothetical
          protein Y37D8A.11a protein.
          Length = 499

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 70 RDPYCSHDRGWKCR 29
          ++ YC H +GW CR
Sbjct: 40 KECYCVHFKGWNCR 53


>Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical
           protein C09F9.2 protein.
          Length = 1642

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 238 CDLTPLPEWSCEQSAWWGACG 176
           CD T   E +CE ++ W  CG
Sbjct: 383 CDKTVENEETCEANSTWAKCG 403


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,342,636
Number of Sequences: 27780
Number of extensions: 46396
Number of successful extensions: 195
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 291481146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)