Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12j08
         (829 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81058-11|CAH60760.1|  201|Caenorhabditis elegans Hypothetical p...    31   1.0  
L25598-1|AAA27942.1|  129|Caenorhabditis elegans Hypothetical pr...    31   1.3  
AF039048-11|AAB94232.1|  421|Caenorhabditis elegans Hypothetical...    31   1.3  
Z81059-5|CAJ15164.1|  176|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AC024201-3|AAK93866.1|  238|Caenorhabditis elegans Dnaj domain (...    29   3.1  
Z81059-3|CAB02927.1|  246|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U80030-13|AAG24169.1|  831|Caenorhabditis elegans Hypothetical p...    29   4.1  
Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical pr...    29   5.4  

>Z81058-11|CAH60760.1|  201|Caenorhabditis elegans Hypothetical
           protein F11E6.11 protein.
          Length = 201

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +2

Query: 224 NFSDFFGGFVTPRSRNVMAWPPLFFVGVLSDMLILLSTFP*VYF 355
           +FS FF G + P    ++ WP      VLS +++LLS F  +Y+
Sbjct: 144 SFSVFFNGSIMPDCSYLVIWPTF----VLSFLILLLSIFVIIYY 183


>L25598-1|AAA27942.1|  129|Caenorhabditis elegans Hypothetical
           protein C06G4.4 protein.
          Length = 129

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/84 (22%), Positives = 36/84 (42%)
 Frame = -2

Query: 255 VTKPPKKSEKLQQYKKAIAAEQTLRTTADVSSLQNHGESAVFQXXXXXXXXXXXXXXEQK 76
           +++ PK+SEK   YKKA+A ++ ++    +      G+  V                +  
Sbjct: 1   MSEAPKRSEKSADYKKAVAKQRRIKKLRKMKIKDRAGDVVVSDISDVEVVGNGDEESQDD 60

Query: 75  RLYPILNTPLDNFIVAFVNPTYPM 4
            L  +L +  D      V+P++PM
Sbjct: 61  WLNDLLKSDGDGGKAGPVDPSHPM 84


>AF039048-11|AAB94232.1|  421|Caenorhabditis elegans Hypothetical
           protein F16B4.1 protein.
          Length = 421

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 205 YRCRANAAHHSRCFFFAEPRGECRFSR 125
           + CRA AA   RC F  E R  CR S+
Sbjct: 49  FSCRACAAFFRRCHFLKENRRRCRLSK 75


>Z81059-5|CAJ15164.1|  176|Caenorhabditis elegans Hypothetical
           protein F11F1.8 protein.
          Length = 176

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
 Frame = -3

Query: 746 MTGVRNQNVQ-LLAALETAKDVILTRLNTLLSEITDSLPDLTLMLDK---LAEQLLEAIN 579
           + G  N  ++ L++ +    + +L  +  +L  + D L DL+ ++D     + + ++AIN
Sbjct: 81  LLGSANDELKNLISTVFKLIEQLLNEVADILQSLPDVLGDLSKIVDDKNLTSVEKIDAIN 140

Query: 578 TMQQTQRNELNNTNSILTNL 519
            ++ T + ELN    I+T L
Sbjct: 141 QLRGTNKIELNTIIFIITQL 160


>AC024201-3|AAK93866.1|  238|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 30 protein.
          Length = 238

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/42 (26%), Positives = 28/42 (66%)
 Frame = -1

Query: 373 LWLTISKIYSRER*QQNKHVRQNADKKKRRPCHDVTRARRNK 248
           LW+T++K+++ +R ++ K + + A+++KRR    + +A   +
Sbjct: 146 LWITVTKVFA-DREKKRKMLEERANEEKRRSTEALVQAAEKR 186


>Z81059-3|CAB02927.1|  246|Caenorhabditis elegans Hypothetical
           protein F11F1.5 protein.
          Length = 246

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
 Frame = -3

Query: 683 ILTRLNTLLSEITD---SLPDLTLMLDKLAE-------QLLEAINTMQQTQRNELNNTNS 534
           I T +  LL+E+ D   SLPD+   L K+ +       +   AIN ++ T + ELN    
Sbjct: 166 IFTLIKQLLNEVADILQSLPDILGKLSKIVDDKNLTSIEKNNAINQLKGTNKIELNTIIF 225

Query: 533 ILTNL 519
           I+T L
Sbjct: 226 IITQL 230


>U80030-13|AAG24169.1|  831|Caenorhabditis elegans Hypothetical
           protein K12D9.12 protein.
          Length = 831

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/65 (26%), Positives = 32/65 (49%)
 Frame = +1

Query: 511 LDAKLVKIELVLFNSLRCVCCIVLMASNNCSANLSNMSVKSGNESVISESNVFNLVKITS 690
           LDAKL +    L + + C+   +    NNC   + N+ ++ G+E  +++  V   +   S
Sbjct: 663 LDAKLCEDYGNLEDIVLCIFISMEELPNNCEIIMGNLIIEGGDEDYVTKLRVLEFL-FGS 721

Query: 691 LAVSN 705
           L + N
Sbjct: 722 LIIQN 726


>Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical
           protein T16G12.5 protein.
          Length = 1142

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 315 TCLFCCQRSREYIFDIVNQSVHEVQFLSVGFV 410
           TCLF C     YI DI+  ++  V  LS+G++
Sbjct: 574 TCLFACVEQIPYIKDILKSALDSV--LSIGYI 603


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,197,004
Number of Sequences: 27780
Number of extensions: 334553
Number of successful extensions: 1075
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)