Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12j04
         (765 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0321 + 24091997-24092530                                         31   1.3  
04_04_1047 - 30408962-30409105,30409204-30409304,30409733-30409820     29   4.1  
12_02_1069 + 25801309-25801433,25802429-25802620,25803130-258031...    29   5.4  
02_05_1056 - 33804717-33804871,33805352-33805418,33805508-338055...    28   7.1  

>05_05_0321 + 24091997-24092530
          Length = 177

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = -3

Query: 607 SARQGSEKQNA*SRPRRRLKMKLKSTDRSVKGSSKNLKPSTWVPGKVLRPRSMPRP 440
           ++R+  ++Q A +   RRL+ +   +  S  GS   +  + +VPG + R  + PRP
Sbjct: 97  ASRRQQQQQAAAAARERRLRRRRSDSRGSCGGSGDGVLLNFYVPGLLTRSMTTPRP 152


>04_04_1047 - 30408962-30409105,30409204-30409304,30409733-30409820
          Length = 110

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 24/108 (22%), Positives = 41/108 (37%)
 Frame = -2

Query: 674 DMASQTQGIQQLLAAEKRAAEKVSXXXXXXXXXXXXXXXXXQDEVXXXXXXXXXXXXXXE 495
           D   +  GIQQLLAAE+ A + V+                 + E+               
Sbjct: 2   DANRRQSGIQQLLAAEQEAQQIVNAARAAKSARLRQAKEEAEREIAEYRAQMEAEFQRKV 61

Query: 494 AKHMGTREGVAAKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYDIK 351
           A+  G       +++ ET  KI ++ +   +    VI+ +L  V  +K
Sbjct: 62  AESSGDSGANVKRLEQETAEKIAQLKQQAASISPEVIQMLLRHVTTVK 109


>12_02_1069 +
           25801309-25801433,25802429-25802620,25803130-25803159,
           25803426-25803500,25803599-25804373,25804549-25804614,
           25804746-25804811,25804898-25805140,25805407-25805502
          Length = 555

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 527 VCTFQLHLEPPPWPALGVLLFASL 598
           V  FQ  + PPPWPA G   F  +
Sbjct: 231 VAAFQSRMMPPPWPARGKAEFGDV 254


>02_05_1056 -
           33804717-33804871,33805352-33805418,33805508-33805576,
           33806414-33806548,33806609-33806680,33807281-33807375,
           33807778-33807859,33807949-33807999,33808107-33808187,
           33808534-33808575,33808705-33808803,33809044-33809115,
           33809166-33809270
          Length = 374

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = -2

Query: 209 CRQVFLEPT*LKKNTARRRK*NVKVQFFCQVIYCMRNQLGTIPSVENSLR 60
           C Q FLE   + +  ++ R  + K++F  QV   ++N L TI SV   +R
Sbjct: 104 CEQFFLEMMKVPRVESKLRILSFKIKFLTQVA-DLKNSLNTINSVAEEVR 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,866,732
Number of Sequences: 37544
Number of extensions: 277687
Number of successful extensions: 700
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)