Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12j01
         (827 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   9.9  
SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom...    25   9.9  

>SPCC330.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 90

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 190 LILIQNFIHQPLLFTAFCMIIIYLSTYL 107
           L +I N I   LLF  FC  I +L T+L
Sbjct: 30  LNIIINLIPLVLLFAFFCPCIYFLHTFL 57


>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 184

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 156 SG*CIKFCIRIKMIQSWWCLCYPI 227
           SG    F IRI +++ W+ +CY +
Sbjct: 41  SGLIALFFIRILLVRGWYIVCYTL 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,360,598
Number of Sequences: 5004
Number of extensions: 70465
Number of successful extensions: 138
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)