Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12j01
         (827 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0808 - 28196563-28196735,28197369-28197440,28197540-281976...    31   1.1  
05_06_0094 + 25477367-25477398,25477516-25477891,25478292-254783...    30   2.6  
01_05_0801 + 25353708-25353914,25354307-25354429,25355035-253552...    29   6.0  
02_02_0001 - 5977498-5979003                                           28   7.9  

>04_04_0808 -
           28196563-28196735,28197369-28197440,28197540-28197666,
           28198362-28198430,28198517-28198583,28198751-28198872,
           28199302-28199412,28199596-28199661,28200156-28200213,
           28200307-28200343,28200420-28200513,28200967-28201032,
           28201139-28201203,28201352-28201496,28201925-28202074,
           28202266-28202335,28202752-28202828,28202919-28202987,
           28203798-28203881,28204018-28204061,28204172-28204273,
           28204420-28204618,28204672-28204727,28204886-28204958,
           28205685-28205771,28205863-28205976,28206985-28207092,
           28207183-28207278,28207722-28207787,28208130-28208222,
           28208429-28208512,28208961-28209078,28209191-28209267,
           28209459-28209641,28210542-28210636,28210903-28211053,
           28212218-28212325,28212513-28212612,28212788-28212840,
           28214022-28214102
          Length = 1269

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +2

Query: 320 ARAGTTLF*LIYLVPPTK*SSIQNIEKLTKAHGRCHLNGCNRQ*IDNKI 466
           A     L  L++LVPPT+        ++  A G C + G   Q  D K+
Sbjct: 19  AAVAVALMQLVFLVPPTRAQQSNGTSRVVPAEGYCSMYGICAQRSDGKV 67


>05_06_0094 +
           25477367-25477398,25477516-25477891,25478292-25478315,
           25479069-25481828
          Length = 1063

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -1

Query: 182 DTEFYTSTTTFHRVLHDNYI--PKYLFNISGGVVHPHRSFSSV 60
           D +  TS   F ++ H   +  P  L N +GGV HP R FSSV
Sbjct: 676 DEDHGTSAKAFSQLFHGTRVEPPSTLRNSNGGVEHPSR-FSSV 717


>01_05_0801 +
           25353708-25353914,25354307-25354429,25355035-25355205,
           25355303-25355392,25355497-25355583,25355664-25355719,
           25355812-25355905,25356032-25356144,25356211-25356283,
           25356603-25356683,25356865-25356951,25357031-25357135,
           25357279-25357385,25357481-25357541,25357931-25358158,
           25359720-25360677,25360816-25360997,25361237-25361326,
           25361422-25361709,25361844-25362056,25362560-25362784
          Length = 1212

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 221 ITKTPPRLDHFDPDTEFYTS 162
           +T+ PP+ + +DP T F+TS
Sbjct: 362 LTEQPPKFEFYDPKTPFFTS 381


>02_02_0001 - 5977498-5979003
          Length = 501

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -1

Query: 200 LDHFDPDTEFYTSTTTFHRVLHDNYIPKYLFNISGGVVHPHRSFSSVWIVKTA 42
           LD  D D+  Y +  +  R      +PKYLF +  G+    + F  +W+VK +
Sbjct: 286 LDAMDTDSVIYVNFGSLARK-----VPKYLFEVGHGLEDSGKPF--IWVVKVS 331


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,771,905
Number of Sequences: 37544
Number of extensions: 372716
Number of successful extensions: 618
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)