Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12j01
         (827 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39744-4|AAK18885.4|  389|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z81038-5|CAB02766.3|  970|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U41029-3|AAF99952.2|  886|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AB096631-1|BAC76731.1|  972|Caenorhabditis elegans isoleucyl-tRN...    28   7.1  

>U39744-4|AAK18885.4|  389|Caenorhabditis elegans Hypothetical
           protein C03F11.4 protein.
          Length = 389

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -1

Query: 215 KTPPRLDHFDPDTEFYTSTTTFH-RV-LHDNYIPKYLFNISGGVVHP 81
           K PP +   D D E+Y   + F+ R+ L D Y+   +  IS   + P
Sbjct: 174 KLPPEIKQLDEDLEYYVENSKFYLRINLRDRYLETRVDEISEKYIGP 220


>Z81038-5|CAB02766.3|  970|Caenorhabditis elegans Hypothetical protein
            C25A1.7 protein.
          Length = 970

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
 Frame = -1

Query: 245  FIYLVLNWITKTP-PRLDHFDPDTEFYTSTTTFHRVL--HDNYIPKYLFNISGGVVHPHR 75
            F+Y V N +  T  P++D           T  +H +L  +++ +P+ L N+S  ++H +R
Sbjct: 872  FVYEVRNLLESTAGPKIDTSKKGIVLQV-TPEYHTILRIYESELPE-LLNVSQVILHENR 929

Query: 74   SFSSVWIVKTAL 39
              +SV +V++ L
Sbjct: 930  DENSVELVESRL 941


>U41029-3|AAF99952.2|  886|Caenorhabditis elegans Hypothetical
           protein F47G3.1 protein.
          Length = 886

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 651 LCPP*DFIVLVTCLCKTDLLILNCLAIST 737
           + PP  FI+L+ C+  +  L++ C  IST
Sbjct: 5   IVPPTRFIILIACILASIQLLVQCSPIST 33


>AB096631-1|BAC76731.1|  972|Caenorhabditis elegans isoleucyl-tRNA
            synthetase (mitochondrial)protein.
          Length = 972

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
 Frame = -1

Query: 245  FIYLVLNWITKTP-PRLDHFDPDTEFYTSTTTFHRVL--HDNYIPKYLFNISGGVVHPHR 75
            F+Y V N +  T  P++D           T  +H +L  +++ +P+ L N+S  ++H +R
Sbjct: 872  FVYEVRNLLESTAGPKIDTSKKGIVLQV-TPEYHTILRIYESELPE-LLNVSQVILHENR 929

Query: 74   SFSSVWIVKTAL 39
              +SV +V++ L
Sbjct: 930  DENSVELVESRL 941


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,320,742
Number of Sequences: 27780
Number of extensions: 384508
Number of successful extensions: 859
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)