Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12j01
         (827 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    24   2.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.4  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   4.6  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 361 STNKVIINTKH*KTDKSTWQMS 426
           S NKVII+ K+   +K  WQ++
Sbjct: 235 SINKVIIHPKYDIIEKDDWQIN 256


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 131 NYIPKYLFNISGGVVHPHRSFSSVW 57
           N IPK    +S  V++PH+     W
Sbjct: 603 NIIPKLQIALSEFVINPHQQHLDQW 627


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -3

Query: 624 IFSEWGYPLDSYDLLIIIMGLLDRVRIKIKRFTD 523
           + +  G P +   LL  +  +LDR+R  I    D
Sbjct: 452 VLTALGLPTNDISLLFAVDWMLDRIRTSINVLGD 485


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,722
Number of Sequences: 438
Number of extensions: 4998
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)