Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12i24
(867 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0352 + 2799748-2799865,2800368-2800412,2800890-2801121,280... 106 2e-23
09_06_0350 + 22461592-22461935,22462788-22462867,22463171-224632... 99 2e-21
11_01_0520 + 4078075-4078198,4078726-4078957,4079068-4079147,407... 84 2e-16
04_03_0214 + 12713865-12713973,12715780-12716011,12716556-127166... 70 2e-12
03_01_0109 - 863381-863575,863749-863795,863893-863980,864078-86... 67 1e-11
02_01_0118 + 870911-871203,872559-872679,872975-873092,873218-87... 65 8e-11
06_01_0199 + 1538124-1538485,1538997-1539076,1539198-1539357,153... 61 1e-09
06_03_0618 + 22798419-22798588,22798672-22798771,22798891-227989... 60 2e-09
04_03_0215 + 12722394-12722581,12722992-12723071,12723315-127235... 55 8e-08
11_01_0519 + 4066776-4066892,4067042-4067099,4067322-4067608,406... 54 1e-07
10_08_0835 - 20916364-20916462,20916503-20916549,20916750-209168... 47 2e-05
10_08_0505 + 18384392-18384454,18384593-18384679,18385878-183864... 46 3e-05
04_04_1598 + 34698260-34698316,34698438-34699544 45 9e-05
11_01_0393 + 2961434-2961564,2961862-2961865,2962429-2963970,296... 38 0.010
10_08_0832 - 20905189-20905347,20905793-20905877,20906385-20906458 38 0.014
11_01_0392 + 2955442-2956876,2957694-2957851 34 0.17
07_01_0501 - 3745447-3746244 32 0.52
03_05_1127 + 30587488-30588291 32 0.52
12_02_1230 - 27204881-27205765 31 0.90
04_04_0373 - 24785799-24786200,24787979-24788161,24790909-247911... 31 0.90
04_04_0608 - 26585436-26585843,26585897-26586091,26586315-265863... 31 1.2
02_04_0234 + 21141704-21141940,21142408-21142477,21142646-211428... 30 2.8
12_02_0726 - 22552005-22552035,22552507-22552598,22552970-225530... 29 4.8
03_02_0150 + 5941560-5941739,5942027-5942118,5942232-5942298,594... 29 4.8
01_07_0056 - 40787723-40788124,40788236-40788430,40788914-40789309 29 4.8
12_02_0160 + 14585559-14586230 29 6.4
09_02_0572 - 10796997-10797152,10797259-10797412,10798023-107980... 28 8.4
07_03_0894 + 22362717-22363514 28 8.4
03_02_0420 - 8298303-8299265,8299351-8299431,8299546-8299668,829... 28 8.4
>01_01_0352 +
2799748-2799865,2800368-2800412,2800890-2801121,
2801242-2801321,2801417-2801570,2801655-2801733,
2801900-2801984,2802121-2802167,2802301-2802471
Length = 336
Score = 106 bits (255), Expect = 2e-23
Identities = 76/230 (33%), Positives = 105/230 (45%), Gaps = 10/230 (4%)
Frame = -1
Query: 852 DLASTASIREFVARFKGEEPHLHVLVNNAGVMEPPKGVTKDGFETQLGVXXXXXXXXXXX 673
DL+S S+R F +F L++L+NNAGVM P G+++DG E Q
Sbjct: 107 DLSSLKSVRAFADQFNSMNLPLNILINNAGVMFCPFGLSEDGVEMQFATNHLGHFLLTNL 166
Query: 672 XXXXLKAXXXXXXXXXXXS-----AHQRGR---IHKHDLNMSENYDASAAYSQSKLANLL 517
+KA AH I LN + YD AY QSKLAN+L
Sbjct: 167 LLDNMKATAKSTGIEGRIVNLSSVAHLHTYPKGIEFDKLNDEKTYDDKMAYGQSKLANIL 226
Query: 516 FARELGRRLL--GTGVATIAVDPGLVDTDITRHMSMMKSVTRFFIYPLFWPFMKKPEIGG 343
A+EL RRL G + V PGL+ T++ RH + V +F Y + W K G
Sbjct: 227 HAKELSRRLKEEGANITINCVHPGLIMTNLMRHSFFLMRVLQFATY-ILW---KSVPQGA 282
Query: 342 QTVVHAALDPKLKDCAGDYYVDMKKAEPSQEAQDFELAQWLWRVSEAWTK 193
T + L+P+LK G Y+ D + S+ A++ LA+ LW SE K
Sbjct: 283 ATTCYVGLNPQLKGVTGQYFADCNVEKTSRFARNDALAKQLWEFSEKLIK 332
>09_06_0350 +
22461592-22461935,22462788-22462867,22463171-22463273,
22463423-22463501,22464208-22464292,22464639-22464685,
22465217-22465375
Length = 298
Score = 99 bits (238), Expect = 2e-21
Identities = 71/217 (32%), Positives = 103/217 (47%), Gaps = 2/217 (0%)
Frame = -1
Query: 852 DLASTASIREFVARFKGEEPHLHVLVNNAGVMEPPKGVTKDGFETQLGVXXXXXXXXXXX 673
DLAS S+R F + F + L++L+NNAGVM P ++KDG E Q
Sbjct: 90 DLASMDSVRAFASDFAAKGLPLNILINNAGVMATPFSLSKDGIELQFATNHVGHFLLTHL 149
Query: 672 XXXXLKAXXXXXXXXXXXSAHQRGRIHKHDLNMSENYDASAAYSQSKLANLLFARELGRR 493
+K ++ GRI + Y++ AY QSKLAN+L A EL RR
Sbjct: 150 LLETMKKTSRE--------SNVEGRIVNVS-SEGHRYNSIGAYGQSKLANILHANELARR 200
Query: 492 LLGTGVATIA--VDPGLVDTDITRHMSMMKSVTRFFIYPLFWPFMKKPEIGGQTVVHAAL 319
GV A + PG + T++ RH S++ + R L +K + G T + AL
Sbjct: 201 FKDEGVNITANSLHPGSIITNLLRHHSILDVLHR----TLGKLVLKNAQQGAATTCYVAL 256
Query: 318 DPKLKDCAGDYYVDMKKAEPSQEAQDFELAQWLWRVS 208
P++K +G Y+ D E S++ D ELA+ LW S
Sbjct: 257 HPQVKGVSGKYFSDSNVNEASEKGNDMELAKRLWEYS 293
>11_01_0520 +
4078075-4078198,4078726-4078957,4079068-4079147,
4079256-4079409,4079438-4079494,4080733-4080811,
4081013-4081094,4081168-4081223,4081310-4081492
Length = 348
Score = 83.8 bits (198), Expect = 2e-16
Identities = 48/129 (37%), Positives = 69/129 (53%), Gaps = 2/129 (1%)
Frame = -1
Query: 564 YDASAAYSQSKLANLLFARELGRRLL--GTGVATIAVDPGLVDTDITRHMSMMKSVTRFF 391
Y AY SKLAN+L A EL RR G + ++ PG++ T++ RH+ +
Sbjct: 217 YRPFKAYGHSKLANILHANELSRRFQEEGCNLTANSLHPGVIATNLPRHILTNSLIIS-- 274
Query: 390 IYPLFWPFMKKPEIGGQTVVHAALDPKLKDCAGDYYVDMKKAEPSQEAQDFELAQWLWRV 211
I+ + PF+K G T + AL P LKD +G Y+ D +A P+ A+D ELA+ LW
Sbjct: 275 IFSVMKPFLKSIPQGAATNCYLALHPGLKDVSGKYFADCNEATPTAVARDAELAKKLWEF 334
Query: 210 SEAWTKLDE 184
SE T D+
Sbjct: 335 SEELTSGDQ 343
Score = 52.4 bits (120), Expect = 5e-07
Identities = 24/46 (52%), Positives = 30/46 (65%)
Frame = -1
Query: 852 DLASTASIREFVARFKGEEPHLHVLVNNAGVMEPPKGVTKDGFETQ 715
DL+S S+R F F HL+VL+NNAGVM P G++KDG E Q
Sbjct: 94 DLSSLDSVRSFAKSFNSSYRHLNVLINNAGVMSCPFGLSKDGIELQ 139
>04_03_0214 +
12713865-12713973,12715780-12716011,12716556-12716635,
12716930-12717083,12717213-12717291,12717654-12717738,
12718420-12718466,12720123-12720281
Length = 314
Score = 70.1 bits (164), Expect = 2e-12
Identities = 62/225 (27%), Positives = 88/225 (39%), Gaps = 10/225 (4%)
Frame = -1
Query: 852 DLASTASIREFVARFKGEEPHLHVLVNNAGVMEPPKGVTKDGFETQLGVXXXXXXXXXXX 673
DL+S +S+R F FK L++L+NNAGV P +++D E
Sbjct: 89 DLSSMSSVRRFAEIFKALNLPLNILINNAGVCFVPFKLSEDDIELHFATNHIGHFLLTDL 148
Query: 672 XXXXLKAXXXXXXXXXXXSA--------HQRGRIHKHDLNMSENYDASAAYSQSKLANLL 517
+K G I +N Y+ AY QSKLAN+L
Sbjct: 149 LIEKMKVTAIESGKEGRVVIVASVSYSLSYPGGICFDKINDESGYNRFLAYGQSKLANIL 208
Query: 516 FARELGRRLLGTGVATI--AVDPGLVDTDITRHMSMMKSVTRFFIYPLFWPFMKKPEIGG 343
+ L L I ++ PG V T+I H + R + F+K E G
Sbjct: 209 HSNLLSSHLKEQDAKVIVNSLHPGAVATNILHHWCPLYGAIR----AIGKYFVKGVEQGA 264
Query: 342 QTVVHAALDPKLKDCAGDYYVDMKKAEPSQEAQDFELAQWLWRVS 208
TV + AL P++ G Y+ D E A D +LA+ LW S
Sbjct: 265 ATVCYVALHPQVAGVTGKYFSDCNITELKSHALDMDLAKRLWDFS 309
>03_01_0109 -
863381-863575,863749-863795,863893-863980,864078-864159,
864264-864420,864501-864583,864724-864955,865032-865146
Length = 332
Score = 67.3 bits (157), Expect = 1e-11
Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 2/123 (1%)
Frame = -1
Query: 564 YDASAAYSQSKLANLLFARELGRRL--LGTGVATIAVDPGLVDTDITRHMSMMKSVTRFF 391
YDA+ AY+ SKLAN+L +EL RL +G V V PG+V T + R + VT
Sbjct: 198 YDATQAYAVSKLANVLHTKELAVRLKEMGANVTVNCVHPGIVRTRLNRDRDGL--VTDL- 254
Query: 390 IYPLFWPFMKKPEIGGQTVVHAALDPKLKDCAGDYYVDMKKAEPSQEAQDFELAQWLWRV 211
++ L +K T + A P+L +G Y+ D +A PS A + A+ LW++
Sbjct: 255 VFLLLSKLLKTIPQAAATTCYVAAHPRLAGVSGRYFADCNEALPSPAATNRHEAERLWQI 314
Query: 210 SEA 202
SE+
Sbjct: 315 SES 317
Score = 37.5 bits (83), Expect = 0.014
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = -1
Query: 858 PXDLASTASIREFVARFKGEEPHLHVLVNNAGVMEPPK-GVTKDGFE 721
P DL+S AS+R F RF LH+L+NNAG + +++DG E
Sbjct: 89 PLDLSSLASVRAFADRFLSLGLPLHLLINNAGKFSHGQLALSEDGVE 135
>02_01_0118 +
870911-871203,872559-872679,872975-873092,873218-873354,
873583-873684,873862-873954,875047-875119,875213-875478
Length = 400
Score = 64.9 bits (151), Expect = 8e-11
Identities = 53/203 (26%), Positives = 88/203 (43%), Gaps = 6/203 (2%)
Frame = -1
Query: 852 DLASTASIREFVARFKGEEPHLHVLVNNAGVME--PPKGVTKDGFETQLGVXXXXXXXXX 679
DL S S+ +F + LHVL+NNAG+ P+ +KDG+E + V
Sbjct: 143 DLLSLDSVVKFADAWNARMAPLHVLINNAGIFSIGEPQRFSKDGYEEHMQVNHLAPALLA 202
Query: 678 XXXXXXLKAXXXXXXXXXXXSAHQRGRIHKHDLNMS---ENYDASAAYSQSKLANLLFAR 508
L H G + D+N++ + + YS SKLA + F+
Sbjct: 203 VLLLPSLLRGSPSRIVNVNSVMHTVGFVDAEDMNLTSGKRKFTSLMGYSNSKLAQIKFSS 262
Query: 507 ELGRRLLGTG-VATIAVDPGLVDTDITRHMSMMKSVTRFFIYPLFWPFMKKPEIGGQTVV 331
L RR+ + I PG+V T++ R + + V + + P F+ + G ++ +
Sbjct: 263 MLHRRIPAEAEINVICASPGIVHTNVARDLPKL-VVAAYHLIPY---FIFDAQEGSRSTL 318
Query: 330 HAALDPKLKDCAGDYYVDMKKAE 262
AA DP++ D Y +M K+E
Sbjct: 319 FAASDPQVPD-----YCEMLKSE 336
>06_01_0199 +
1538124-1538485,1538997-1539076,1539198-1539357,
1539497-1539578,1540080-1540167,1540256-1540302,
1540623-1540865
Length = 353
Score = 61.3 bits (142), Expect = 1e-09
Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Frame = -1
Query: 564 YDASAAYSQSKLANLLFARELGRRL--LGTGVATIAVDPGLVDTDITRHMSMMKSVTRFF 391
YD + AY+ SKLAN+L R L RL + V V PG+V T + R + + T FF
Sbjct: 203 YDPTRAYALSKLANVLHTRALADRLKEMKANVTANCVHPGIVRTRLIRERDGLVTNTVFF 262
Query: 390 IYPLFWPFMKKPEIGGQTVVHAALDPKLKDCAGDYYVDMKKAEPSQEAQDFELAQWLWRV 211
+ +K T + A+ P + +G Y+ D +A PS+ + + A LWR
Sbjct: 263 LAS---KLLKTIPQAAATTCYVAVHPAVAGVSGKYFADCNEASPSRLGSNADEAAKLWRF 319
Query: 210 SE 205
S+
Sbjct: 320 SD 321
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = -1
Query: 858 PXDLASTASIREFVARFKGEEPHLHVLVNNAGVMEPPKGVTKDGFE 721
P DL+S AS+R F ARF L++L+NNAG ++ DG E
Sbjct: 94 PLDLSSLASVRRFAARFLALGLPLNLLINNAGKFADRFALSDDGVE 139
>06_03_0618 +
22798419-22798588,22798672-22798771,22798891-22798971,
22799131-22799180,22799302-22799452,22800027-22800083,
22800171-22800292,22800397-22800601
Length = 311
Score = 60.1 bits (139), Expect = 2e-09
Identities = 48/197 (24%), Positives = 78/197 (39%), Gaps = 1/197 (0%)
Frame = -1
Query: 852 DLASTASIREFVARFKGEEPHLHVLVNNAGVMEPPKGVTKDGFETQLGVXXXXXXXXXXX 673
DL+S + ++ F +F + LHVLVNNAG++E + T +G E V
Sbjct: 93 DLSSISEVKSFATKFSSTDKPLHVLVNNAGLLEHKRVTTPEGLELNFAVNVAATYTLTEL 152
Query: 672 XXXXLKAXXXXXXXXXXXSAHQRGRIHKHDLNMSE-NYDASAAYSQSKLANLLFARELGR 496
L+ S DL E N+D + Y+++K +
Sbjct: 153 VMPLLEKAAPDARVITVSSGGMYTEPLNKDLQFGENNFDGTQQYARNKRVQVALTERWSE 212
Query: 495 RLLGTGVATIAVDPGLVDTDITRHMSMMKSVTRFFIYPLFWPFMKKPEIGGQTVVHAALD 316
+ GV ++ PG DT + KS+ + ++ + G TV+ AL
Sbjct: 213 KCSNKGVGFYSMHPGWADTP-----GVSKSLPG--LSEKLSGNLRSNDEGADTVIWLALQ 265
Query: 315 PKLKDCAGDYYVDMKKA 265
PK K +G +Y D +A
Sbjct: 266 PKEKLTSGSFYFDRAEA 282
>04_03_0215 +
12722394-12722581,12722992-12723071,12723315-12723532,
12724084-12724168,12724679-12724725,12725378-12725536
Length = 258
Score = 54.8 bits (126), Expect = 8e-08
Identities = 53/220 (24%), Positives = 85/220 (38%), Gaps = 5/220 (2%)
Frame = -1
Query: 852 DLASTASIREFVARFKGEEPHLHVLVNNAGVMEPPKGVTKDGFETQLGVXXXXXXXXXXX 673
DL+ +S+R F F L++LVNNAG+ P ++++G E
Sbjct: 38 DLSLMSSVRRFAENFNALNLPLNILVNNAGIAFVPFKLSEEGIELHFSTNHLGHFLLTDL 97
Query: 672 XXXXLKAXXXXXXXXXXXS---AHQRGRIHKHDLNMSENYDASAAYSQSKLANLL-FARE 505
+K ++ ++ + + D S Y ++ L F
Sbjct: 98 LLEKMKVTAIESGIEGRVVIVASNSYKHPYREGIRFDKINDESGYYFLTQRILLFTFVYL 157
Query: 504 LGRRLLGTGVATI-AVDPGLVDTDITRHMSMMKSVTRFFIYPLFWPFMKKPEIGGQTVVH 328
R T+ ++ PG V T+I RH + + + L F+K E G TV +
Sbjct: 158 FNRSKEQDAKVTVNSLHPGAVVTNIMRHWYFVNGM----LSTLGKFFVKGVEQGAATVCY 213
Query: 327 AALDPKLKDCAGDYYVDMKKAEPSQEAQDFELAQWLWRVS 208
AL P++ G Y+VD E A D LA+ LW S
Sbjct: 214 VALHPQVAGVTGKYFVDCNVTELKSHALDMGLAKRLWDFS 253
>11_01_0519 + 4066776-4066892,4067042-4067099,4067322-4067608,
4067706-4067822,4067898-4067958,4068042-4068133,
4068547-4068632,4068926-4068975,4069077-4069117,
4069222-4069392,4069875-4069942,4070088-4070148,
4070471-4070757,4072008-4072172,4072759-4072760,
4072829-4073139,4073600-4073787,4075231-4075482,
4076035-4076114,4076199-4076399,4076959-4077014,
4077137-4077328
Length = 980
Score = 54.4 bits (125), Expect = 1e-07
Identities = 25/55 (45%), Positives = 34/55 (61%)
Frame = -1
Query: 369 FMKKPEIGGQTVVHAALDPKLKDCAGDYYVDMKKAEPSQEAQDFELAQWLWRVSE 205
F+K + G T + AL P+LKD +G Y+ D K+A P A+D ELA+ LW SE
Sbjct: 911 FLKNTQQGAATTCYLALHPELKDVSGKYFADCKEATPRPAARDAELAKRLWDFSE 965
Score = 50.0 bits (114), Expect = 2e-06
Identities = 22/46 (47%), Positives = 29/46 (63%)
Frame = -1
Query: 852 DLASTASIREFVARFKGEEPHLHVLVNNAGVMEPPKGVTKDGFETQ 715
DLAS S+R F F HL++L+NNAG+M P ++KDG E Q
Sbjct: 780 DLASLDSVRRFATAFDSSHTHLNILINNAGIMGCPFKLSKDGIELQ 825
>10_08_0835 -
20916364-20916462,20916503-20916549,20916750-20916864,
20916933-20917011,20917365-20917518,20917660-20917739,
20918170-20918401,20918755-20918860
Length = 303
Score = 47.2 bits (107), Expect = 2e-05
Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Frame = -1
Query: 852 DLASTASIREFVARFKGEEPHLHVLVNNAGVMEPPKGVTKDGFETQ-----LGVXXXXXX 688
DL+S S+R F F+ L++L+NNAG+M + DG E Q +G
Sbjct: 88 DLSSMDSVRRFATEFEALNLPLNILINNAGIMTRNCTRSIDGLELQFATNHIGHFLLTNL 147
Query: 687 XXXXXXXXXLKAXXXXXXXXXXXSAH----QRGRIHKHDLNMSENYDASAAYSQSKLANL 520
K SAH +G I + + + AY QSKLAN+
Sbjct: 148 LLENMKRTSSKTGVEGRIVNVSSSAHFVTYPKG-ICFDKVKEPSRFISLIAYGQSKLANI 206
Query: 519 LFARELGRRLL------------GTGVATIAVDPGLVDTDITRHM----SMMKSVTRF 394
L + EL R L G ++ AV PG+V T++ RH +++KS+ RF
Sbjct: 207 LHSTELSRVLKNNRETVEYEQEDGVNISANAVHPGVVTTNLFRHRTIINALVKSIGRF 264
>10_08_0505 +
18384392-18384454,18384593-18384679,18385878-18386409,
18387042-18387564,18387734-18387791
Length = 420
Score = 46.4 bits (105), Expect = 3e-05
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 11/141 (7%)
Frame = -1
Query: 564 YDASAAYSQSKLANLLFARELGRRLLG-TGVATIAVDPGLVDTD--ITRHMSMMKSVTRF 394
+D + AY SK+ N+L +E RR G TGV ++ PG + T H+ + +
Sbjct: 267 FDGAKAYKDSKVCNMLTMQEFHRRYHGETGVTFASLYPGCIATTGLFREHVPLFR----- 321
Query: 393 FIYPLFWPFMKK----PEIGGQTVVHAALDPKLKDCAGDYYVDMKKA----EPSQEAQDF 238
++P F ++ K E G+ + DP L + + A + S+EA D
Sbjct: 322 LLFPPFQKYITKGYVSEEEAGKRLAQVVSDPSLTKSGVYWSWNNNSASFENQLSEEASDP 381
Query: 237 ELAQWLWRVSEAWTKLDEHKQ 175
E A+ +W +SE L +H Q
Sbjct: 382 EKAKKVWELSEKLVGLADHDQ 402
Score = 39.1 bits (87), Expect = 0.005
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Frame = -1
Query: 852 DLASTASIREFVARFKGEEPHLHVLVNNAGVMEP---PKGVTKDGFETQLGV 706
DLAS S+R+FVA + E + V+V NA V +P T DGFE +GV
Sbjct: 143 DLASLDSVRQFVANVRRLEMPVDVVVCNAAVYQPTAKQPSFTADGFEMSVGV 194
>04_04_1598 + 34698260-34698316,34698438-34699544
Length = 387
Score = 44.8 bits (101), Expect = 9e-05
Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 12/146 (8%)
Frame = -1
Query: 606 RGRIHKHDLNMSENYDASAAYSQSKLANLLFARELGRRL-LGTGVATIAVDPGLVDTD-- 436
RG+ ++ +E++D + AY SK+ N+L +E RR TG+ ++ PG + T
Sbjct: 242 RGQNGSAMIDGAESFDGAKAYKDSKICNMLTMQEFHRRFHEETGITFASLYPGCIATTGL 301
Query: 435 ITRHMSMMKSVTRFFIYPLFWPFMKKPEI----GGQTVVHAALDPKLKDCAGDYYVDMKK 268
H+ + + ++P F F+ K + G+ + DP L +G Y+ K
Sbjct: 302 FREHIPLFR-----LLFPPFQRFVTKGFVSEAESGKRLAQVVGDPSLTK-SGVYWSWNKD 355
Query: 267 A-----EPSQEAQDFELAQWLWRVSE 205
+ + SQEA D E A+ LW +SE
Sbjct: 356 SASFENQLSQEASDPEKARKLWDLSE 381
Score = 35.5 bits (78), Expect = 0.055
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = -1
Query: 852 DLASTASIREFVARFKGEEPHLHVLVNNAGVMEP---PKGVTKDGFETQLGV 706
DLAS S+R+FV F+ L LV NA + P T DG+E +GV
Sbjct: 131 DLASLDSVRQFVDNFRRSGMPLDALVCNAAIYRPTARQPTFTADGYEMSVGV 182
>11_01_0393 + 2961434-2961564,2961862-2961865,2962429-2963970,
2964572-2964675,2964791-2964877,2965378-2965414,
2965729-2965801,2965963-2967494
Length = 1169
Score = 37.9 bits (84), Expect = 0.010
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 11/79 (13%)
Frame = -1
Query: 372 PFMKKPEIGGQTVV-HAALDPKLKDCAGDYYV----DMKKAEPSQEAQDFE-----LAQW 223
P + P +G +T+V HA LD +++DC + D+K E S ++ E + ++
Sbjct: 884 PILGPPRMGKKTLVQHACLDERVRDCFSHIFFFKEDDLKTGELSLNSKASEGKYLFVIEF 943
Query: 222 LWRVSE-AWTKLDEHKQAI 169
+W V E AWTK + Q I
Sbjct: 944 IWDVDEAAWTKFQSYLQNI 962
>10_08_0832 - 20905189-20905347,20905793-20905877,20906385-20906458
Length = 105
Score = 37.5 bits (83), Expect = 0.014
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -1
Query: 348 GGQTVVHAALDPKLKDCAGDYYVDMKKAEPSQEAQDFELAQWLWRVS 208
G T + AL P++K +G Y+ + PS A + ELA+ LW S
Sbjct: 54 GAATTCYVALHPQVKGISGKYFSNCNLDSPSSHASNAELAKKLWEFS 100
>11_01_0392 + 2955442-2956876,2957694-2957851
Length = 530
Score = 33.9 bits (74), Expect = 0.17
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Frame = -1
Query: 387 YPLFWPFMKKPEIGGQTVV-HAALDPKLKDCAGDYYV----DMKKAEPSQEAQDFE---- 235
Y P + IG +T+V HA LD +++DC + D+K E S ++ +
Sbjct: 196 YVSILPIIGPQRIGKKTLVQHACLDERVRDCFSHIFFFKEDDLKTGELSLNSKASQGKYL 255
Query: 234 -LAQWLWRVSE-AWTKLDEHKQ 175
+ +++W V E AWTK + Q
Sbjct: 256 FVIEFIWDVDEAAWTKFQSYLQ 277
>07_01_0501 - 3745447-3746244
Length = 265
Score = 32.3 bits (70), Expect = 0.52
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -1
Query: 552 AAYSQSKLANLLFARELGRRLLGTGVATIAVDPGLVDTDI 433
+AY+ SK A R + + L GTG+ V PG V TD+
Sbjct: 170 SAYTASKAAVEAMVRTMAKELKGTGITANCVAPGPVATDM 209
>03_05_1127 + 30587488-30588291
Length = 267
Score = 32.3 bits (70), Expect = 0.52
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = -1
Query: 552 AAYSQSKLANLLFARELGRRLLGTGVATIAVDPGLVDT 439
AAY+ SK A + + L R L GTG+ AV PG T
Sbjct: 173 AAYAASKAAVEVMTKILARELRGTGITANAVAPGSTGT 210
>12_02_1230 - 27204881-27205765
Length = 294
Score = 31.5 bits (68), Expect = 0.90
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -1
Query: 858 PXDLASTASIREFVARFKGEEPHLHVLVNNAGV 760
P D+ S S+ VAR E + VLVNNAG+
Sbjct: 66 PLDVTSDESVEGAVARVLAEHGRVDVLVNNAGI 98
>04_04_0373 -
24785799-24786200,24787979-24788161,24790909-24791170,
24791565-24791656
Length = 312
Score = 31.5 bits (68), Expect = 0.90
Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -1
Query: 546 YSQSKLANLLFARELGRRLLGTG--VATIAVDPGLVDTDITR 427
YS SKLA +AR L RRL G V+ PG TD+TR
Sbjct: 229 YSVSKLALNAYARVLARRLQARGDRVSVNCFCPGFTRTDMTR 270
>04_04_0608 -
26585436-26585843,26585897-26586091,26586315-26586389,
26586682-26586742,26587179-26587213
Length = 257
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = -1
Query: 552 AAYSQSKLANLLFARELGRRLLGTGVATIAVDPGLVDTDITRHMSMM 412
+AY +K A +AR L R+ V VDPG V TD+TR+ ++
Sbjct: 179 SAYKVAKAAMSAYARILARKRPALRVN--CVDPGYVKTDLTRNSGLL 223
>02_04_0234 +
21141704-21141940,21142408-21142477,21142646-21142839,
21142928-21143100,21144233-21144302
Length = 247
Score = 29.9 bits (64), Expect = 2.8
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Frame = -1
Query: 582 LNMSENYDASAA-----YSQSKLANLLFARELGRRLLGTGVATIAVDPGLVDTDI 433
+N+S + SAA Y SK A R L + L G+A IA+ PG+V+TD+
Sbjct: 154 VNLSSGWGRSAAAEVAPYCASKWAIEGLTRSLAKEL-PPGLAAIALSPGVVNTDM 207
>12_02_0726 -
22552005-22552035,22552507-22552598,22552970-22553094,
22553221-22553311,22553475-22553755,22554211-22554394,
22554499-22554583,22554692-22554782,22554909-22555293,
22555457-22555669,22555873-22556418,22556572-22556788,
22556907-22557058,22557519-22557663,22557846-22557907,
22559130-22559291,22559393-22559482,22560055-22560215,
22560907-22560997,22561125-22561308,22561556-22561737,
22561857-22562086,22562622-22562685
Length = 1287
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -2
Query: 857 PXTWPARPPSESSLPDSKERSHTFTCWSIT 768
P TWP+ PP S+ +KE++ +F + +T
Sbjct: 420 PATWPSIPPDSSAETMAKEKASSFQHYFLT 449
>03_02_0150 +
5941560-5941739,5942027-5942118,5942232-5942298,
5942401-5942523,5942692-5942784,5943149-5943278,
5943483-5943564,5943682-5943814,5944246-5944451,
5944538-5944663,5945024-5945333,5945518-5945643,
5946151-5946456
Length = 657
Score = 29.1 bits (62), Expect = 4.8
Identities = 19/33 (57%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
Frame = +3
Query: 444 LRGQGLLRLSP---LQF-RVTSCRAPARTVGWR 530
L+GQ + LSP L F R T C PARTVGWR
Sbjct: 207 LQGQ-IQSLSPAGTLTFSRSTMCGPPARTVGWR 238
>01_07_0056 - 40787723-40788124,40788236-40788430,40788914-40789309
Length = 330
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 861 RPXDLASTASIREFVARFKGEEPHLHVLVNNAGV 760
R D+ AS+ F + +HVLVNNAGV
Sbjct: 105 RQLDVTDAASVEGFATWVERTHGGVHVLVNNAGV 138
>12_02_0160 + 14585559-14586230
Length = 223
Score = 28.7 bits (61), Expect = 6.4
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = -2
Query: 668 WIRSRPHPQAAWWWC 624
W R H AWWWC
Sbjct: 9 WCGGRRHRVGAWWWC 23
>09_02_0572 -
10796997-10797152,10797259-10797412,10798023-10798065,
10798470-10798588,10798718-10798926,10799534-10799583,
10799610-10799718
Length = 279
Score = 28.3 bits (60), Expect = 8.4
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Frame = -1
Query: 852 DLASTASIREFVARFK------GEEPHLHVLVNNAGVMEPPKGVTKDGFETQL 712
DL+S SI++F E + +LVNNAG++ +T+DG + +
Sbjct: 73 DLSSYKSIKKFETSLNQWIKDSNMEHSIQLLVNNAGILAKSYRITEDGLDEMI 125
>07_03_0894 + 22362717-22363514
Length = 265
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 552 AAYSQSKLANLLFARELGRRLLGTGVATIAVDPGLVDTDI 433
+AY+ SK A R + + L GT + V PG TD+
Sbjct: 171 SAYTASKAAVEAMVRTMAKELKGTRITANCVAPGATATDM 210
>03_02_0420 -
8298303-8299265,8299351-8299431,8299546-8299668,
8299815-8299983,8300108-8300478
Length = 568
Score = 28.3 bits (60), Expect = 8.4
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -2
Query: 857 PXTW-PARPPSESSLPDSKERSHTFTCWS 774
P +W P +PPS S+ P +RS + WS
Sbjct: 335 PPSWKPHKPPSPSTSPSWSDRSTATSVWS 363
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,476,874
Number of Sequences: 37544
Number of extensions: 485798
Number of successful extensions: 1336
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1324
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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