Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12i24
(867 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117207-18|CAB60405.3| 384|Caenorhabditis elegans Hypothetical... 70 2e-12
Z81035-3|CAB02732.1| 333|Caenorhabditis elegans Hypothetical pr... 68 8e-12
Z83236-3|CAB05779.1| 379|Caenorhabditis elegans Hypothetical pr... 67 2e-11
U28943-11|AAK68295.1| 319|Caenorhabditis elegans Hypothetical p... 63 3e-10
Z83236-5|CAB05784.1| 315|Caenorhabditis elegans Hypothetical pr... 59 4e-09
U28943-10|AAA68362.1| 329|Caenorhabditis elegans Dehydrogenases... 52 7e-07
U80439-3|AAB37640.1| 323|Caenorhabditis elegans Dehydrogenases,... 51 9e-07
AF125956-3|AAD14726.3| 264|Caenorhabditis elegans Hypothetical ... 49 5e-06
U20864-12|AAK68358.2| 257|Caenorhabditis elegans Hypothetical p... 33 0.26
AF016440-8|ABD94107.1| 286|Caenorhabditis elegans Dehydrogenase... 33 0.26
AF016440-7|AAB65901.2| 317|Caenorhabditis elegans Dehydrogenase... 33 0.26
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 29 4.3
Z70782-6|CAA94844.1| 337|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z68341-1|CAA92764.1| 258|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z70287-3|CAA94300.1| 1459|Caenorhabditis elegans Hypothetical pr... 28 9.9
>AL117207-18|CAB60405.3| 384|Caenorhabditis elegans Hypothetical
protein Y60A3A.10 protein.
Length = 384
Score = 69.7 bits (163), Expect = 2e-12
Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 12/247 (4%)
Frame = -1
Query: 864 CRPXDLASTASIREFVARF---KGEEPHLHVLVNNAGVMEPPKGVTKDGFETQLGVXXXX 694
CR DL SIR FV + K E + +V+NA +M+ + V KDG E +
Sbjct: 103 CRQCDLEDFDSIRTFVQKLSKGKFELDRIDGIVHNAAMMQSERAVNKDGIEKTIATNHLG 162
Query: 693 XXXXXXXXXXXLKAXXXXXXXXXXXS--AHQRGRIHKHDLNMSEN----YDASAAYSQSK 532
L A S ++ ++ D N SEN +D Y SK
Sbjct: 163 SFLLTGLLLDKLLAQPNPVRIVFLNSNIIDRKCDLNLADFN-SENAGKKFDGYEIYKHSK 221
Query: 531 LANLLFARELGRRLLGTGVATIAVDPGLVDTDITRHMSMMKSVTRFFIYPL--FWPFMKK 358
LA+ LF +EL RL T + + DPG ++++ M ++ + F ++
Sbjct: 222 LASALFTKELSERLSDTNIHVLMADPGRTKSNLSAQMDGQTFFLSRWLLKIVSFGMGERR 281
Query: 357 PEIGGQTVVHAALDPKLKDCAGDYYVDMKKAEPSQEA-QDFELAQWLWRVSEAWTKLDEH 181
E + V+ A DP D G + + +P + D + LW VS WT+L EH
Sbjct: 282 TEKAVRPVLFALCDPDTSDENGLFIDRERHQQPWNDVIMDAAKREKLWNVSVTWTRLGEH 341
Query: 180 KQAIAKD 160
+ + ++
Sbjct: 342 LKKMKEE 348
>Z81035-3|CAB02732.1| 333|Caenorhabditis elegans Hypothetical
protein C15H11.4 protein.
Length = 333
Score = 68.1 bits (159), Expect = 8e-12
Identities = 57/226 (25%), Positives = 92/226 (40%), Gaps = 5/226 (2%)
Frame = -1
Query: 852 DLASTASIREFVARFKGEEPHLHVLVNNAGVMEPPKGV-TKDGFETQLGVXXXXXXXXXX 676
DL S+R + +L+NNAG+M K TKDG E
Sbjct: 106 DLTDFESVRRAAKETLESTDTIDILINNAGIMFQSKHEQTKDGHEKTWQSNHLGPFLLTE 165
Query: 675 XXXXXLKAXXXXXXXXXXXSAHQRG-RIHKHDLNMSENYDASAAYSQSKLANLLFARELG 499
+K H + +I+ ++ +++ +Y QSKLAN++ AR L
Sbjct: 166 LFLPAVKKSSYARIINVSSRIHLKSEKINLATVDDKKSFGMMKSYRQSKLANVMHARALT 225
Query: 498 RRLLGTGVATIAVD---PGLVDTDITRHMSMMKSVTRFFIYPLFWPFMKKPEIGGQTVVH 328
+ L G + V+ PG+V+T++ R+ + + W MK G QT +
Sbjct: 226 KELRKDGAEHVTVNSLHPGVVNTELARNTILNTPGIKQITAVFRWFLMKTSRDGAQTSIF 285
Query: 327 AALDPKLKDCAGDYYVDMKKAEPSQEAQDFELAQWLWRVSEAWTKL 190
AL K+ +G Y+ D K + + A D + Q L+ S T L
Sbjct: 286 LALGKKIGGISGKYFADCKLTQENPLALDDQACQDLYNYSLECTGL 331
>Z83236-3|CAB05779.1| 379|Caenorhabditis elegans Hypothetical
protein K10H10.3a protein.
Length = 379
Score = 66.9 bits (156), Expect = 2e-11
Identities = 62/229 (27%), Positives = 102/229 (44%), Gaps = 13/229 (5%)
Frame = -1
Query: 852 DLASTASIREFVARFKGEEPHLHVLVNNAGVMEPPKGVTKDGFETQLGVXXXXXXXXXXX 673
DL+ ++R+ + + +H L+ NAGV P TKDGFE+ GV
Sbjct: 144 DLSDLKTVRKAGEDYLAKNWPIHGLILNAGVFRPAAAKTKDGFESHYGVNVVAHFTLLRI 203
Query: 672 XXXXLKAXXXXXXXXXXXSAHQRGRIHK-----HDLNMSENYDASAA----YSQSKLANL 520
++ + + K +++ + D+SA+ Y SK+A++
Sbjct: 204 LLPVVRRSAPSRVVFLSSTLSSKHGFKKSMGISEKMSILQGEDSSASTLQMYGASKMADM 263
Query: 519 LFARELGRRLLGTGVATIAVDPGL-VDTDITRHMSMMKSVTRFFIYPLFWPFMKKPEIGG 343
L A +L R G++T +V PG V TDI R+ + K FI + PF K G
Sbjct: 264 LIAFKLHRDEYKNGISTYSVHPGSGVRTDIFRNSLLGK-----FIGFVTTPFTKNASQGA 318
Query: 342 QTVVHAALDPKLKDCAGDYYV---DMKKAEPSQEAQDFELAQWLWRVSE 205
T V+ A P+++ +G Y+ D K + + A+D EL + LW+ E
Sbjct: 319 ATTVYCATHPEVEKISGKYWESCWDNDKID-KKTARDEELQEALWKKLE 366
>U28943-11|AAK68295.1| 319|Caenorhabditis elegans Hypothetical
protein E04F6.15 protein.
Length = 319
Score = 62.9 bits (146), Expect = 3e-10
Identities = 61/230 (26%), Positives = 98/230 (42%), Gaps = 14/230 (6%)
Frame = -1
Query: 852 DLASTASIREFVARFKGEEPHLHVLVNNAGVMEPPKGVTKDGFETQLGVXXXXXXXXXXX 673
DL S +S+++ + ++ LH L+ NAGV P + T DGFE G+
Sbjct: 87 DLNSLSSVKKAADEYLEQKWPLHGLILNAGVFGPSEKTTSDGFEAHFGINHLAHFILIKE 146
Query: 672 XXXXLKAXXXXXXXXXXXSAHQRGRIHKHDLNMSENYDASAA----------YSQSKLAN 523
L+ + + K D + E D Y++SK+ N
Sbjct: 147 LLPVLRESAPSRIVIVTSMLSKHTCV-KPDSRIVEKLDTLCPKEATQWYFRLYAKSKMCN 205
Query: 522 LLFARELGRRLLGTGVATIAVDPGL-VDTDITRHMSMMKSVTRFFIYPLFWPFMKKPEIG 346
+L A +L R ++ AV PG V TD+ R + S+ F L PF K G
Sbjct: 206 ILTAFKLHRDEFKNRISVYAVHPGSGVRTDLHRDFGLW-SIADF----LSIPFTKNASQG 260
Query: 345 GQTVVHAALDPKLKDCAGDYYV---DMKKAEPSQEAQDFELAQWLWRVSE 205
T ++ A+ P++K+ +G Y+ D +K + ++D EL + LW SE
Sbjct: 261 AATSLYCAVHPEVKELSGKYWESCWDDEKNLDKKVSRDEELQEALWEHSE 310
>Z83236-5|CAB05784.1| 315|Caenorhabditis elegans Hypothetical
protein K10H10.6 protein.
Length = 315
Score = 59.3 bits (137), Expect = 4e-09
Identities = 60/223 (26%), Positives = 94/223 (42%), Gaps = 7/223 (3%)
Frame = -1
Query: 852 DLASTASIREFVARFKGEEPHLHVLVNNAGVMEPPKGVTKDGFETQLGVXXXXXXXXXXX 673
DL+ + R+ + ++ +H L+ NAGV +P TKDG E+ GV
Sbjct: 86 DLSDLKTARKAGEEYLKKKWPIHGLILNAGVFQPAVAKTKDGLESHFGVNVLAHFTVMVR 145
Query: 672 XXXXLK-AXXXXXXXXXXXSAHQRGRIHKHDLNMSENYDASA--AYSQSKLANLLFAREL 502
+ G K + E AS+ Y SK+A++L A +L
Sbjct: 146 LSAPSRIVILSSTLSSRHGFKKSMGITEKLKILQEEKASASSLQLYGASKMADMLIAFKL 205
Query: 501 GRRLLGTGVATIAVDPG-LVDTDITRHMSMMKSVTRFFIYPLFWPFMKKPEIGGQTVVHA 325
R ++T V PG V TDI R ++ K +T L P +K G T V+
Sbjct: 206 HRDEYKNEISTYFVHPGDGVRTDIFRDSTLGKVLT-----VLSTPCIKNCSQGAATTVYC 260
Query: 324 ALDPKLKDCAGDYYV---DMKKAEPSQEAQDFELAQWLWRVSE 205
A P+++ +G Y+ D K + + A+D EL + LW+ E
Sbjct: 261 ATHPEVEKISGKYWESCWDNDKID-KKTARDEELQEALWKKLE 302
>U28943-10|AAA68362.1| 329|Caenorhabditis elegans Dehydrogenases,
short chain protein7 protein.
Length = 329
Score = 51.6 bits (118), Expect = 7e-07
Identities = 59/231 (25%), Positives = 97/231 (41%), Gaps = 15/231 (6%)
Frame = -1
Query: 852 DLASTASIREFVARFKGEEPHLHVLVNNAGVMEPPKGVTKDGFETQLGVXXXXXXXXXXX 673
DL S S+++ + ++ +H L+ NAGV T DG E+ +
Sbjct: 87 DLNSLHSVKKAAEVYISKKWSIHCLILNAGVFGTASKTTVDGLESHFAINHLSHFLLIQE 146
Query: 672 XXXXLKAXXXXXXXXXXXSAHQRGRIHKHDLNMSENY---------DAS--AAYSQSKLA 526
++ S H + ++++ E DAS YS+SK+
Sbjct: 147 LLPIVRQSIPSRIVLVSSSVHATCGVSP-EMSIEEKLKILCPESSSDASWFRLYSRSKMC 205
Query: 525 NLLFARELGRRLLGTGVATIAVDPGL-VDTDITRHMSMMKSVTRFFIYPLFWPFMKKPEI 349
N+L A +L R G++T +V PG V T I R S + S+ L PF K
Sbjct: 206 NMLVAFKLHRDEYHNGISTYSVHPGNGVRTSIFRD-SWLVSIASI----LSTPFTKNISQ 260
Query: 348 GGQTVVHAALDPKLKDCAGDYY---VDMKKAEPSQEAQDFELAQWLWRVSE 205
G T V+ A P++ + +G Y+ D +K + A+D +L LW+ S+
Sbjct: 261 GASTTVYCAGHPEVANVSGKYWDSNWDDEKGLYEEVARDEQLQDALWKHSD 311
>U80439-3|AAB37640.1| 323|Caenorhabditis elegans Dehydrogenases,
short chain protein1 protein.
Length = 323
Score = 51.2 bits (117), Expect = 9e-07
Identities = 53/223 (23%), Positives = 85/223 (38%), Gaps = 9/223 (4%)
Frame = -1
Query: 852 DLASTASIREFVARFKGEEPHLHVLVNNAGVMEPPKGVTKDGFETQLG--------VXXX 697
D+ + SI F +LHV++NNAG+M P ++ DG E V
Sbjct: 69 DVTNYNSICNFTDEISRMFKYLHVIINNAGIMGMPFELSVDGIEMHFATNVFGHYVVVER 128
Query: 696 XXXXXXXXXXXXLKAXXXXXXXXXXXSAHQRGRIHKHDLNMSENYDASAAYSQSKLANLL 517
K+ +A ++ K + +Y AY+ SKLAN L
Sbjct: 129 LLPLLLKTDRPDFKSRVIVVSSGLYRNAEAIPQVSKLLGQKTYDYSPKQAYAFSKLANCL 188
Query: 516 FARELGRRLLGTGVATIAVDPGLVD-TDITRHMSMMKSVTRFFIYPLFWPFMKKPEIGGQ 340
+ L + L V V PG V+ T++ R + R P+ W K E G +
Sbjct: 189 YTGALSKMLEPHNVGVYCVRPGFVNGTELGRETHW---ILRALAAPIIWFIAKTLEQGCE 245
Query: 339 TVVHAALDPKLKDCAGDYYVDMKKAEPSQEAQDFELAQWLWRV 211
T+V+ A + G Y + +K E E + + +W +
Sbjct: 246 TIVYLAETSGNQLKNGSMYYE-RKEEAYNEMVEVTSIRQVWAI 287
>AF125956-3|AAD14726.3| 264|Caenorhabditis elegans Hypothetical
protein DC2.5 protein.
Length = 264
Score = 48.8 bits (111), Expect = 5e-06
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 4/118 (3%)
Frame = -1
Query: 546 YSQSKLANLLFARELGRRLLGTGVATIAVDPG-LVDTDITRHMSMMKSVTRFFIYPLFWP 370
Y++SK+ N+L A +L R G++ +V PG V T++ R + S+ F L P
Sbjct: 142 YAKSKMCNMLIAFKLHRDEFENGISVYSVHPGSAVRTNLHRDVPFW-SIFNF----LSIP 196
Query: 369 FMKKPEIGGQTVVHAALDPKLKDCAGDYYVDMKKAE---PSQEAQDFELAQWLWRVSE 205
F K G T ++ A+ P++++ +G Y+ E + A+D EL + LW SE
Sbjct: 197 FTKNASQGAATSLYCAVHPEVQELSGRYWESCWDDELNLDEKVARDEELQEALWEYSE 254
>U20864-12|AAK68358.2| 257|Caenorhabditis elegans Hypothetical
protein F32A5.8 protein.
Length = 257
Score = 33.1 bits (72), Expect = 0.26
Identities = 19/49 (38%), Positives = 23/49 (46%)
Frame = -1
Query: 852 DLASTASIREFVARFKGEEPHLHVLVNNAGVMEPPKGVTKDGFETQLGV 706
DL S S + F + LH L+ NAGV P T D FE+ GV
Sbjct: 95 DLNSLQSAKAAADEFLSKHWPLHGLILNAGVFAPTVKFTFDNFESHFGV 143
>AF016440-8|ABD94107.1| 286|Caenorhabditis elegans Dehydrogenases,
short chain protein17, isoform b protein.
Length = 286
Score = 33.1 bits (72), Expect = 0.26
Identities = 29/102 (28%), Positives = 42/102 (41%)
Frame = -1
Query: 795 PHLHVLVNNAGVMEPPKGVTKDGFETQLGVXXXXXXXXXXXXXXXLKAXXXXXXXXXXXS 616
P L+VL+ NAGV+ P + TKDG E+ V L +
Sbjct: 87 PELNVLLCNAGVLYPRRLETKDGMESTFQVNYLAHYLLCNLLLPVL-SHNRSNVIVVGSV 145
Query: 615 AHQRGRIHKHDLNMSENYDASAAYSQSKLANLLFARELGRRL 490
H + D+ ++ Y+ YS+SKL L A L RR+
Sbjct: 146 LHTWPSLDWADVMATKEYEKYLQYSRSKLMCHLMAFALHRRM 187
>AF016440-7|AAB65901.2| 317|Caenorhabditis elegans Dehydrogenases,
short chain protein17, isoform a protein.
Length = 317
Score = 33.1 bits (72), Expect = 0.26
Identities = 29/102 (28%), Positives = 42/102 (41%)
Frame = -1
Query: 795 PHLHVLVNNAGVMEPPKGVTKDGFETQLGVXXXXXXXXXXXXXXXLKAXXXXXXXXXXXS 616
P L+VL+ NAGV+ P + TKDG E+ V L +
Sbjct: 118 PELNVLLCNAGVLYPRRLETKDGMESTFQVNYLAHYLLCNLLLPVL-SHNRSNVIVVGSV 176
Query: 615 AHQRGRIHKHDLNMSENYDASAAYSQSKLANLLFARELGRRL 490
H + D+ ++ Y+ YS+SKL L A L RR+
Sbjct: 177 LHTWPSLDWADVMATKEYEKYLQYSRSKLMCHLMAFALHRRM 218
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 285 YVDMKKAEPSQEAQDFELAQWLWRVSEAWTKLD 187
Y M A P+ + A +LWRV++ WT+ D
Sbjct: 882 YEYMTAAVPNAVIRPISSALYLWRVTDTWTECD 914
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 285 YVDMKKAEPSQEAQDFELAQWLWRVSEAWTKLD 187
Y M A P+ + A +LWRV++ WT+ D
Sbjct: 882 YEYMTAAVPNAVIRPISSALYLWRVTDTWTECD 914
>Z70782-6|CAA94844.1| 337|Caenorhabditis elegans Hypothetical
protein R04B5.8 protein.
Length = 337
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 28 HIFTYIIKIKSNSRITSVSC*KNAFFTQLPSI 123
H+F Y KI S+ +++SV +N LP+I
Sbjct: 111 HVFYYRYKILSHQKLSSVQIMRNFIIVHLPAI 142
>Z68341-1|CAA92764.1| 258|Caenorhabditis elegans Hypothetical
protein F01G4.2 protein.
Length = 258
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 552 AAYSQSKLANLLFARELGRRLLGTGVATIAVDPGLVDTDI 433
+AYS SK A + L R G G+ + PGL+DT +
Sbjct: 163 SAYSASKGAIVGMTLPLARDFAGDGIRFNTIAPGLMDTPL 202
>Z70287-3|CAA94300.1| 1459|Caenorhabditis elegans Hypothetical protein
R09E10.5 protein.
Length = 1459
Score = 27.9 bits (59), Expect = 9.9
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -1
Query: 597 IHKHDLNMSENYDASAAYSQSKLANLLFARELGRRL----LGTGVATIAVDP 454
I + L S NY +AAYS + N + + R L L T T+A+ P
Sbjct: 1372 IKRKKLQESRNYSGTAAYSNNAFQNQTYETKPSRALSVGDLSTAPRTVAMPP 1423
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,756,288
Number of Sequences: 27780
Number of extensions: 372961
Number of successful extensions: 974
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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