Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12i24
         (867 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.6  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          22   8.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   8.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   8.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   8.4  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 602 PRWCALLDTTTTRLGDEALSVSRSKFVSKKCPR*LTPSW 718
           PR+C   D+  T    EA S +    +S+     L+PS+
Sbjct: 536 PRYCLFGDSVNTASRMEATSQAMQIHISQSTKELLSPSY 574


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 612 HQRGRIHKHDLNMSENYDASAAYSQS 535
           ++  R H+ D  ++E+YDAS++ S S
Sbjct: 28  YKHSRRHR-DFTVAESYDASSSNSDS 52


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 758 WNHPRESLRTASR 720
           W+ PRES +T S+
Sbjct: 47  WSRPRESAQTTSK 59


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 215 GSARRGPSWTSINKPSPKTHGIRRQIQIY*LIEGSCVK 102
           G+ R+ PS TS+N    K   I   I++      SC+K
Sbjct: 223 GTLRKSPSLTSLNAYLIKNQTITCPIKVSWRGNYSCLK 260


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 215 GSARRGPSWTSINKPSPKTHGIRRQIQIY*LIEGSCVK 102
           G+ R+ PS TS+N    K   I   I++      SC+K
Sbjct: 274 GTLRKSPSLTSLNAYLIKNQTITCPIKVSWRGNYSCLK 311


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 215 GSARRGPSWTSINKPSPKTHGIRRQIQIY*LIEGSCVK 102
           G+ R+ PS TS+N    K   I   I++      SC+K
Sbjct: 223 GTLRKSPSLTSLNAYLIKNQTITCPIKVSWRGNYSCLK 260


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,175
Number of Sequences: 438
Number of extensions: 4822
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)