Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12i23
         (815 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               23   3.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   4.5  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   5.9  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           22   5.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   5.9  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   5.9  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   7.8  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   7.8  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   7.8  

>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 452 IIFPYQLVPNVIIKLNNFDQIMSVAPNKAESYKKIRLFC 336
           +IF Y L   VII+ N  ++I+ +    A S K IR +C
Sbjct: 6   VIFVYILSVAVIIRANGINEILKI---MAVSMKDIR-YC 40


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 635 IDNLYNKLNWERTRRLMKGD 576
           +DNL  +L  ER  +L +GD
Sbjct: 626 VDNLLGELGGERLLKLAQGD 645


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 566 NCATVNRSSLKYIKQAQSLLGIP 498
           NC T   +SL+  KQ  + +G P
Sbjct: 240 NCWTQTENSLEKAKQVGAFMGCP 262


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 566 NCATVNRSSLKYIKQAQSLLGIP 498
           NC T   +SL+  KQ  + +G P
Sbjct: 111 NCWTQTENSLEKAKQVGAFMGCP 133


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 10/40 (25%), Positives = 15/40 (37%)
 Frame = -2

Query: 121 YETDGGRHYIKSDGRSHRQQYRRYHPSQQLAD*RRSTWPI 2
           Y T G  H+    G SH      +H S       + + P+
Sbjct: 409 YSTPGPHHHTMGHGHSHIHATPHHHHSHAATPHHQHSTPL 448


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = -1

Query: 629 NLYNKLNWERTRRLMKGDVPSNCATVNRSSLKYIKQAQSLLGIPDYSQTVVDFVKMFQKI 450
           N+  KL+  R     +G+  +N    N+ S +  + A      P Y Q      K+ QK 
Sbjct: 77  NITIKLD-TRAEDSTRGEQEANLGYTNKMSTRGKRPAS-----PGYVQPPTKHQKLDQKF 130

Query: 449 IFPYQ 435
           IFP +
Sbjct: 131 IFPQE 135


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 566 NCATVNRSSLKYIKQAQSLLGIP 498
           NC T   +SL+  KQ  + +G P
Sbjct: 240 NCWTQTENSLEKAKQVGAFMGCP 262


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +3

Query: 546 AVYCSAIGWHVALHKPARSLPIQFVVQIINFLVRQI 653
           + YC      V +  P R L IQ   QI+ F +  I
Sbjct: 269 STYCEP---QVVIVSPTRELTIQIWQQIVKFSLNSI 301


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 588 KPARSLPIQFVVQIINFLVRQIDYIARGLFAI 683
           KP + +P+Q  +   N +++ I+++ + L AI
Sbjct: 54  KPGKLVPLQCDLSNQNDILKVIEWVEKNLGAI 85


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -2

Query: 784 KSWWKAMTFYYV 749
           K WWK   FY V
Sbjct: 22  KGWWKNAIFYQV 33


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,229
Number of Sequences: 438
Number of extensions: 5079
Number of successful extensions: 20
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)