Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12i21
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    33   0.070
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    28   1.5  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    27   4.6  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    26   8.0  
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60...    26   8.0  
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    26   8.0  

>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 32.7 bits (71), Expect = 0.070
 Identities = 17/37 (45%), Positives = 18/37 (48%)
 Frame = -1

Query: 803 LHSHDVKYGSGSGQQSVTAVEVSDDNNSHWLVRPMTG 693
           LHSH   Y  GS QQ VT     D NN  W+  P  G
Sbjct: 353 LHSHVQTYPEGSEQQQVTGYHHKDGNN-EWMFVPTHG 388



 Score = 29.9 bits (64), Expect = 0.49
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 533 PIKCNTNIRLQHVATKKNLHSHFFTSPLSGNQ-EVSCY 423
           PI   + +RL H  T +NLH+H   +PL+    EVS Y
Sbjct: 401 PILNGSVVRLIHPFTNRNLHTHKIPAPLNKRMYEVSGY 438



 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
 Frame = -1

Query: 845 GSILKLINTDLKLRLHSHDVKYGSGSGQQSVTAVEVSD--DNNSHWLVRPMTGETCKRGY 672
           GS+++LI+      LH+H +          V+   + D  D   +W+V  +     +  Y
Sbjct: 405 GSVVRLIHPFTNRNLHTHKIPAPLNKRMYEVSGYGLGDVGDEKDYWIVNILYDTAHRDAY 464

Query: 671 EI 666
            +
Sbjct: 465 NV 466


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
 Frame = -1

Query: 803 LHSHDVKYGS-------GSGQQSVTAVEVSDDNNSHWLVRP 702
           LHSH  KY          SG Q VT  +  D+NN +W++ P
Sbjct: 356 LHSHPEKYPIPYDDGRISSGGQQVTGYQFDDENN-YWMILP 395



 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 539 SAPIKCNTNIRLQHVATKKNLHSHFFTSPLSGNQE 435
           + P+K    I+L HV T  +L +H   SP     E
Sbjct: 408 NVPVKNMDYIKLHHVGTNTDLMTHDVASPYHPTNE 442


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = -1

Query: 530 IKCNTNIRLQHVATKKNLHSHFFTSPLSGNQ---EVSCY 423
           +K  + +RL+HV T + LHSH     +S N    E S Y
Sbjct: 377 LKDGSVVRLRHVMTGRALHSHEHKPIVSNNDWQLEASAY 415


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -1

Query: 860 EFVTCGSILKLINTDLKLRLHSHDV 786
           E+  CG ++  +NT L++RL   ++
Sbjct: 117 EYCPCGGLIDFLNTRLQVRLSEQEI 141


>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
           Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 582

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -1

Query: 668 ILNNAHKQLNLTL*KSKDIYGTECSVHHHYSSVKLQDT*KMFFSAPIK 525
           IL NA  + NL + K K++YG E ++ +  +  +  D  ++    P+K
Sbjct: 486 ILENAGLEGNLIVGKLKELYGKEFNIGYDIAKDRFVDLNEIGVLDPLK 533


>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 318 SINMSKFYWCISPPVVIVADHSPIV 392
           S+   +    ISP V++ ++HSP+V
Sbjct: 180 SLQFQQALLAISPSVIVTSEHSPLV 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,562,530
Number of Sequences: 5004
Number of extensions: 73858
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)