Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12i21
(866 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0809 - 21426670-21426753,21427188-21427317,21427403-214274... 82 5e-16
08_01_1061 - 10804269-10804352,10804464-10804593,10804696-108047... 81 1e-15
10_08_0598 + 19093417-19094220 32 0.68
03_03_0268 + 16047211-16047213,16047349-16047547,16047681-16047922 31 0.90
03_03_0267 + 16041974-16042549 31 1.6
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 29 3.6
11_06_0354 - 22605903-22606145,22606239-22606442,22607227-226074... 29 4.8
>08_02_0809 -
21426670-21426753,21427188-21427317,21427403-21427452,
21428209-21428349,21428907-21429047,21429144-21429251
Length = 217
Score = 82.2 bits (194), Expect = 5e-16
Identities = 44/114 (38%), Positives = 61/114 (53%), Gaps = 1/114 (0%)
Frame = -1
Query: 530 IKCNTNIRLQHVATKKNLHSHFFTSPLSGNQEVSCY-XXXXXXXXXXDNWTVVCNNDYWR 354
I+ + IRLQH+ T+K LHSH SPLSGN EVSC+ + W+
Sbjct: 99 IETGSIIRLQHMRTRKWLHSHLHASPLSGNLEVSCFGGDGQSDTGDYWRLEIEGGGKLWK 158
Query: 353 RDTPVKFRHVDTGSYLAGSGRTFGRPINGQGEIVGVSSQYGAYTDWQASEGLFV 192
+D V+ RHVDTG YL + + R GQ E+ GV + A W A+EG+++
Sbjct: 159 QDQKVRLRHVDTGGYLHSHNKKYNRLGGGQQEVCGVREK-RAENIWLATEGVYL 211
Score = 74.5 bits (175), Expect = 1e-13
Identities = 34/60 (56%), Positives = 42/60 (70%)
Frame = -1
Query: 854 VTCGSILKLINTDLKLRLHSHDVKYGSGSGQQSVTAVEVSDDNNSHWLVRPMTGETCKRG 675
V GS +KL++ K RLHSHDV YGSGSGQQSVT DD+NS+W+VRP + K+G
Sbjct: 37 VAYGSTIKLMHEKTKHRLHSHDVPYGSGSGQQSVTGFPEVDDSNSYWIVRPSPDSSAKQG 96
>08_01_1061 -
10804269-10804352,10804464-10804593,10804696-10804745,
10805154-10805216,10806235-10806375,10806541-10806925,
10807735-10808339
Length = 485
Score = 81.0 bits (191), Expect = 1e-15
Identities = 55/143 (38%), Positives = 75/143 (52%), Gaps = 2/143 (1%)
Frame = -1
Query: 854 VTCGSILKLINTDLKLRLHSHDVKYGSGSGQQSVTAVEVSDDNNSHWLVRPMTGETCKRG 675
+T GS +KL++ K RLHSHDV YGSGSGQQSVT+ DD+NS+W+VRP + K+G
Sbjct: 331 ITYGSAIKLMHERTKFRLHSHDVPYGSGSGQQSVTSFPNVDDSNSYWIVRPQPDTSAKQG 390
Query: 674 YEILNNAHKQLNLTL*KSKDIYGTECSVHHHYSSVKLQDT*KMFFSAPIKCNTNIRLQHV 495
I + G S Y ++++ + K + + N IRL+HV
Sbjct: 391 DPITHGTVVSC---------FGGENESDTGDYWRLEIEGSGKSW-----RQNQKIRLRHV 436
Query: 494 ATKKNLHSH--FFTSPLSGNQEV 432
T LHSH +T G QEV
Sbjct: 437 DTGGYLHSHDRKYTRIAGGQQEV 459
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/56 (37%), Positives = 32/56 (57%)
Frame = -1
Query: 359 WRRDTPVKFRHVDTGSYLAGSGRTFGRPINGQGEIVGVSSQYGAYTDWQASEGLFV 192
WR++ ++ RHVDTG YL R + R GQ E+ GV + W A+EG+++
Sbjct: 425 WRQNQKIRLRHVDTGGYLHSHDRKYTRIAGGQQEVCGVGDKRPDNV-WLAAEGVYL 479
>10_08_0598 + 19093417-19094220
Length = 267
Score = 31.9 bits (69), Expect = 0.68
Identities = 21/66 (31%), Positives = 32/66 (48%)
Frame = -2
Query: 457 HLSLAIKRYHVMETMRVKGTVETIGLWSATMTTGGEIHQ*NLDMLILDRILQAPGEHLVV 278
H A H E R+ G V + W+AT +GGE + + +++ +L A GE L +
Sbjct: 13 HARTASHPCHYPELARLDGGVRELMSWTATSRSGGE---GSSGLALVEAVLAALGEVLEL 69
Query: 277 PSMVKA 260
P V A
Sbjct: 70 PVAVAA 75
>03_03_0268 + 16047211-16047213,16047349-16047547,16047681-16047922
Length = 147
Score = 31.5 bits (68), Expect = 0.90
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -1
Query: 317 GSYLAGSGRTFGRPINGQGEIVGVSSQYGAYTDWQASEGLFVHP 186
G + G+G F P+ G +VG ++ G Y + S G++VHP
Sbjct: 106 GPFGNGAGTPFAVPVLNNGSVVGFFARAGPYLE---SIGIYVHP 146
>03_03_0267 + 16041974-16042549
Length = 191
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -1
Query: 317 GSYLAGSGRTFGRPINGQGEIVGVSSQYGAYTDWQASEGLFVHP 186
G + G+G F P+ G G +VG + GAY + + G++V+P
Sbjct: 145 GPFGYGAGTPFSVPVRGDGGVVGFFVRAGAYLE---AIGVYVNP 185
>02_01_0084 -
573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 318 SINMSKFYWCISPPVVIVADHSPIVSTVPFTLIV 419
SIN +WC S V+V D + T+ FTL V
Sbjct: 499 SINQLLEFWCKSHGAVLVDDKEYVTKTILFTLTV 532
>11_06_0354 -
22605903-22606145,22606239-22606442,22607227-22607490,
22607945-22608142,22608238-22608498,22608977-22609183,
22610004-22610207,22610455-22610520,22610717-22610949,
22610982-22611051,22611109-22611136,22611243-22611367,
22611950-22612051
Length = 734
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -1
Query: 317 GSYLAGSGRTFGRPINGQGEIVGVSSQYGAYTDWQASEGLFVHPGELLPHQ 165
G Y G F PI +G IVG + G Y D + G++V+P + H+
Sbjct: 383 GPYGQVGGTPFQIPIQIKGSIVGFFGRVGWYVD---AFGIYVNPNQDATHE 430
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,263,742
Number of Sequences: 37544
Number of extensions: 462118
Number of successful extensions: 890
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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