Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12i17
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...    28   1.5  
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    28   1.9  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    27   2.6  

>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 530 YLTKNDRVSYKSVHTYNIRKF 592
           YLTKN R+S   ++T N+R F
Sbjct: 407 YLTKNGRISISGLNTSNVRYF 427


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 351 LWVWYRVPSLVSLLGNEIAPSAPSGVQLRLYV 256
           L+ WY+ P+L+S L   + P  P    LRL +
Sbjct: 378 LYKWYKGPTLLSALDQLVPPEKPYRKPLRLSI 409


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 649 LYKAISRIVYPDLLLKT*FEFSYVVSMYRFIADTIVF 539
           +YK +S I+  D+L K  F+ +  +S+Y  I D  +F
Sbjct: 317 VYKVLSEILRDDMLKKQRFDENKYLSLYDLIHDNNLF 353


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,401,485
Number of Sequences: 5004
Number of extensions: 69787
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)