Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12i17
(855 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 23 4.7
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 23 4.7
DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex det... 22 6.3
DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex det... 22 6.3
DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex det... 22 6.3
DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex det... 22 6.3
DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex det... 22 6.3
DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex det... 22 6.3
DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex det... 22 6.3
DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex det... 22 6.3
DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex det... 22 6.3
DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex det... 22 8.3
DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex det... 22 8.3
DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex det... 22 8.3
DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex det... 22 8.3
DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex det... 22 8.3
DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex det... 22 8.3
DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex det... 22 8.3
DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex det... 22 8.3
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 22.6 bits (46), Expect = 4.7
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = -3
Query: 175 FSVPQMYH-IRDMIANFYSCFW 113
F V + Y IRDMI + C+W
Sbjct: 470 FGVNRFYDGIRDMIGYYPCCWW 491
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 22.6 bits (46), Expect = 4.7
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = -3
Query: 175 FSVPQMYH-IRDMIANFYSCFW 113
F V + Y IRDMI + C+W
Sbjct: 523 FGVNRFYDGIRDMIGYYPCCWW 544
>DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 22.2 bits (45), Expect = 6.3
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 8 PLXIALHFNLYKFFIVTNYNQQINSN 85
P I+ N YK+ NYN N+N
Sbjct: 79 PKIISSLSNNYKYSNYNNYNNNYNNN 104
>DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 22.2 bits (45), Expect = 6.3
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 8 PLXIALHFNLYKFFIVTNYNQQINSN 85
P I+ N YK+ NYN N+N
Sbjct: 79 PKIISSLSNNYKYSNYNNYNNNYNNN 104
>DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 6.3
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 8 PLXIALHFNLYKFFIVTNYNQQINSN 85
P I+ N YK+ NYN N+N
Sbjct: 79 PKIISSLSNNYKYSNYNNYNNNYNTN 104
>DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 6.3
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 8 PLXIALHFNLYKFFIVTNYNQQINSN 85
P I+ N YK+ NYN N+N
Sbjct: 79 PKIISSLSNNYKYSNYNNYNNNYNTN 104
>DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 6.3
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 8 PLXIALHFNLYKFFIVTNYNQQINSN 85
P I+ N YK+ NYN N+N
Sbjct: 79 PKIISSLSNNYKYSNYNNYNNNYNTN 104
>DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 6.3
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 8 PLXIALHFNLYKFFIVTNYNQQINSN 85
P I+ N YK+ NYN N+N
Sbjct: 79 PKIISSLSNNYKYSNYNNYNNNYNTN 104
>DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 6.3
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 8 PLXIALHFNLYKFFIVTNYNQQINSN 85
P I+ N YK+ NYN N+N
Sbjct: 79 PKIISSLSNNYKYSNYNNYNNNYNTN 104
>DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 6.3
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 8 PLXIALHFNLYKFFIVTNYNQQINSN 85
P I+ N YK+ NYN N+N
Sbjct: 79 PKIISSLSNNYKYSNYNNYNNNYNTN 104
>DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 6.3
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 8 PLXIALHFNLYKFFIVTNYNQQINSN 85
P I+ N YK+ NYN N+N
Sbjct: 79 PKIISSLSNNYKYSNYNNYNNNYNTN 104
>DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.8 bits (44), Expect = 8.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -3
Query: 424 SLSMNFYYFLHFNYTFKIRYNN 359
SLS N+ Y + NY YNN
Sbjct: 84 SLSNNYNYSNYNNYNNNNNYNN 105
>DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 21.8 bits (44), Expect = 8.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -3
Query: 424 SLSMNFYYFLHFNYTFKIRYNN 359
SLS N+ Y + NY YNN
Sbjct: 84 SLSNNYNYSNYNNYNNNNNYNN 105
>DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.8 bits (44), Expect = 8.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -3
Query: 424 SLSMNFYYFLHFNYTFKIRYNN 359
SLS N+ Y + NY YNN
Sbjct: 84 SLSNNYNYSNYNNYNNNNNYNN 105
>DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.8 bits (44), Expect = 8.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -3
Query: 424 SLSMNFYYFLHFNYTFKIRYNN 359
SLS N+ Y + NY YNN
Sbjct: 84 SLSNNYNYSNYNNYNNNNNYNN 105
>DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.8 bits (44), Expect = 8.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -3
Query: 424 SLSMNFYYFLHFNYTFKIRYNN 359
SLS N+ Y + NY YNN
Sbjct: 84 SLSNNYNYSNYNNYNNNNNYNN 105
>DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.8 bits (44), Expect = 8.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -3
Query: 424 SLSMNFYYFLHFNYTFKIRYNN 359
SLS N+ Y + NY YNN
Sbjct: 84 SLSNNYNYSNYNNYNNNNNYNN 105
>DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.8 bits (44), Expect = 8.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -3
Query: 424 SLSMNFYYFLHFNYTFKIRYNN 359
SLS N+ Y + NY YNN
Sbjct: 84 SLSNNYNYSNYNNYNNNNNYNN 105
>DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.8 bits (44), Expect = 8.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -3
Query: 424 SLSMNFYYFLHFNYTFKIRYNN 359
SLS N+ Y + NY YNN
Sbjct: 84 SLSNNYNYSNYNNYNNNNNYNN 105
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,786
Number of Sequences: 438
Number of extensions: 4842
Number of successful extensions: 27
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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