Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12i16
         (859 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyce...   221   8e-59
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy...    28   1.5  
SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr...    27   2.6  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    27   4.5  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    26   6.0  
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    26   7.9  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    26   7.9  

>SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score =  221 bits (541), Expect = 8e-59
 Identities = 105/181 (58%), Positives = 135/181 (74%)
 Frame = -3

Query: 548 SKVAMRKVAVPAHRYTPLKESWLKIFTPIVEHLLLQVRFNTKTRNVEIKVGPETKDIANL 369
           +K  MR+V +P HR TPL+  W K++ P+VEHLLLQVR NTK+R+VE++    TKD   L
Sbjct: 77  AKPQMRRVPIPPHRMTPLRNVWPKLYPPLVEHLLLQVRMNTKSRSVELRESKATKDPGAL 136

Query: 368 QKAADFVKAFIYGFEVXXXXXXXXXXXLFVESFEVKDVKTLNGDHLSRAIGRLAGKAGRT 189
           QK  DFV+AF  GF++           L++++FE+KDVKTL GDHLSRAIGR+AG+ G+T
Sbjct: 137 QKGMDFVQAFALGFDIDDAIALLRLDDLYIDTFEIKDVKTLQGDHLSRAIGRIAGQGGKT 196

Query: 188 KFTIENVTKTRIVLADSKIHILGSYQNIALARRAICNLIMGSPPSKVYGNLRNVANRVAK 9
           KF IEN ++TRIVLADSKIHILG + NI +A+ A+ +LI+GSPP KVY NLRN A R AK
Sbjct: 197 KFAIENASRTRIVLADSKIHILGGFTNIRIAKDAVVSLILGSPPGKVYANLRNAAAR-AK 255

Query: 8   E 6
           E
Sbjct: 256 E 256


>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 327

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = -3

Query: 215 RLAGKAGRTKFTIENVTKTRIVLADSKIHILGSYQNIALARRAI 84
           RL G  G+T   +E +T+  I++  + + ++G Y+ +   RR +
Sbjct: 157 RLIGTNGQTLKALELLTQCYILVQGTTVAVMGGYKGLKEVRRIV 200


>SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +3

Query: 627 LFNLHTISGVICSFALYIFKLHRLFSWQKIINTY 728
           +F+++ I G+I S+ L IF++ RL S Q +  +Y
Sbjct: 27  IFSVYIIIGLIISYLLQIFRIVRLGSSQGLSFSY 60


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 418 LVFVLNLTCSNKCSTIGVNIFSQLSLSGVYL 510
           L F L  TC  +  ++ +N F     SG+YL
Sbjct: 25  LTFFLLTTCQLRILSLSINAFCVFGASGIYL 55


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 743 METENISVDDFLPAKKTMKLKNIKRKATDDTGDGMEVEEPT 621
           ++  N   D F+P  KT  L N+      +TG+ +   EPT
Sbjct: 427 IDPSNQPSDQFIPLLKTCALCNLSTVNQTETGEWVVKGEPT 467


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = -2

Query: 138 KNSYIGQLSEYCFGKTGYM*FDNGISAFKSLREFEKRR 25
           +++ +GQ+  +CF KTG +  ++ ++ F + R  E  +
Sbjct: 36  RSAKLGQVIHHCFYKTGLIILESRLNVFGTSRPRESSK 73


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
            transporting Cta4 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1211

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 615  PNCGLFNLHTISGVICSFALYIFKL 689
            P  G+FN + I  V+  FA++I  L
Sbjct: 1051 PQAGIFNTYIIGSVLGQFAIHIVTL 1075


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,088,572
Number of Sequences: 5004
Number of extensions: 58331
Number of successful extensions: 136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)