Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12i16
         (859 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC018152-1|AAH18152.1|  204|Homo sapiens PNO1 protein protein.        259   8e-69
BC008304-1|AAH08304.1|  252|Homo sapiens partner of NOB1 homolog...   259   8e-69
AK223118-1|BAD96838.1|  248|Homo sapiens putatative 28 kDa prote...   259   8e-69
AF349314-1|AAK29434.1|  252|Homo sapiens RNA-binding protein LOC...   259   8e-69
AF164799-1|AAF80763.1|  252|Homo sapiens putatative 28 kDa prote...   259   8e-69
AC017083-2|AAY14714.1|  252|Homo sapiens unknown protein.             259   8e-69

>BC018152-1|AAH18152.1|  204|Homo sapiens PNO1 protein protein.
          Length = 204

 Score =  259 bits (635), Expect = 8e-69
 Identities = 124/181 (68%), Positives = 147/181 (81%)
 Frame = -3

Query: 545 KVAMRKVAVPAHRYTPLKESWLKIFTPIVEHLLLQVRFNTKTRNVEIKVGPETKDIANLQ 366
           K   RK+ VPA+RYTPLKE+W+KIFTPIVEHL LQ+RFN K+RNVEI+   ETKD++ L 
Sbjct: 24  KEETRKIPVPANRYTPLKENWMKIFTPIVEHLGLQIRFNLKSRNVEIRTCKETKDVSALT 83

Query: 365 KAADFVKAFIYGFEVXXXXXXXXXXXLFVESFEVKDVKTLNGDHLSRAIGRLAGKAGRTK 186
           KAADFVKAFI GF+V           LF+ESFE+ DVK L GDHLSRAIGR+AGK G+TK
Sbjct: 84  KAADFVKAFILGFQVEDALALIRLDDLFLESFEITDVKPLKGDHLSRAIGRIAGKGGKTK 143

Query: 185 FTIENVTKTRIVLADSKIHILGSYQNIALARRAICNLIMGSPPSKVYGNLRNVANRVAKE 6
           FTIENVT+TRIVLAD K+HILGS+QNI +AR AICNLI+G+PPSKVYGN+R VA+R A  
Sbjct: 144 FTIENVTRTRIVLADVKVHILGSFQNIKMARTAICNLILGNPPSKVYGNIRAVASRSADR 203

Query: 5   Y 3
           +
Sbjct: 204 F 204


>BC008304-1|AAH08304.1|  252|Homo sapiens partner of NOB1 homolog
           (S. cerevisiae) protein.
          Length = 252

 Score =  259 bits (635), Expect = 8e-69
 Identities = 124/181 (68%), Positives = 147/181 (81%)
 Frame = -3

Query: 545 KVAMRKVAVPAHRYTPLKESWLKIFTPIVEHLLLQVRFNTKTRNVEIKVGPETKDIANLQ 366
           K   RK+ VPA+RYTPLKE+W+KIFTPIVEHL LQ+RFN K+RNVEI+   ETKD++ L 
Sbjct: 72  KEETRKIPVPANRYTPLKENWMKIFTPIVEHLGLQIRFNLKSRNVEIRTCKETKDVSALT 131

Query: 365 KAADFVKAFIYGFEVXXXXXXXXXXXLFVESFEVKDVKTLNGDHLSRAIGRLAGKAGRTK 186
           KAADFVKAFI GF+V           LF+ESFE+ DVK L GDHLSRAIGR+AGK G+TK
Sbjct: 132 KAADFVKAFILGFQVEDALALIRLDDLFLESFEITDVKPLKGDHLSRAIGRIAGKGGKTK 191

Query: 185 FTIENVTKTRIVLADSKIHILGSYQNIALARRAICNLIMGSPPSKVYGNLRNVANRVAKE 6
           FTIENVT+TRIVLAD K+HILGS+QNI +AR AICNLI+G+PPSKVYGN+R VA+R A  
Sbjct: 192 FTIENVTRTRIVLADVKVHILGSFQNIKMARTAICNLILGNPPSKVYGNIRAVASRSADR 251

Query: 5   Y 3
           +
Sbjct: 252 F 252


>AK223118-1|BAD96838.1|  248|Homo sapiens putatative 28 kDa protein
           variant protein.
          Length = 248

 Score =  259 bits (635), Expect = 8e-69
 Identities = 124/181 (68%), Positives = 147/181 (81%)
 Frame = -3

Query: 545 KVAMRKVAVPAHRYTPLKESWLKIFTPIVEHLLLQVRFNTKTRNVEIKVGPETKDIANLQ 366
           K   RK+ VPA+RYTPLKE+W+KIFTPIVEHL LQ+RFN K+RNVEI+   ETKD++ L 
Sbjct: 68  KEETRKIPVPANRYTPLKENWMKIFTPIVEHLGLQIRFNLKSRNVEIRTCKETKDVSALT 127

Query: 365 KAADFVKAFIYGFEVXXXXXXXXXXXLFVESFEVKDVKTLNGDHLSRAIGRLAGKAGRTK 186
           KAADFVKAFI GF+V           LF+ESFE+ DVK L GDHLSRAIGR+AGK G+TK
Sbjct: 128 KAADFVKAFILGFQVEDALALIRLDDLFLESFEITDVKPLKGDHLSRAIGRIAGKGGKTK 187

Query: 185 FTIENVTKTRIVLADSKIHILGSYQNIALARRAICNLIMGSPPSKVYGNLRNVANRVAKE 6
           FTIENVT+TRIVLAD K+HILGS+QNI +AR AICNLI+G+PPSKVYGN+R VA+R A  
Sbjct: 188 FTIENVTRTRIVLADVKVHILGSFQNIKMARTAICNLILGNPPSKVYGNIRAVASRSADR 247

Query: 5   Y 3
           +
Sbjct: 248 F 248


>AF349314-1|AAK29434.1|  252|Homo sapiens RNA-binding protein
           LOC56902 protein.
          Length = 252

 Score =  259 bits (635), Expect = 8e-69
 Identities = 124/181 (68%), Positives = 147/181 (81%)
 Frame = -3

Query: 545 KVAMRKVAVPAHRYTPLKESWLKIFTPIVEHLLLQVRFNTKTRNVEIKVGPETKDIANLQ 366
           K   RK+ VPA+RYTPLKE+W+KIFTPIVEHL LQ+RFN K+RNVEI+   ETKD++ L 
Sbjct: 72  KEETRKIPVPANRYTPLKENWMKIFTPIVEHLGLQIRFNLKSRNVEIRTCKETKDVSALT 131

Query: 365 KAADFVKAFIYGFEVXXXXXXXXXXXLFVESFEVKDVKTLNGDHLSRAIGRLAGKAGRTK 186
           KAADFVKAFI GF+V           LF+ESFE+ DVK L GDHLSRAIGR+AGK G+TK
Sbjct: 132 KAADFVKAFILGFQVEDALALIRLDDLFLESFEITDVKPLKGDHLSRAIGRIAGKGGKTK 191

Query: 185 FTIENVTKTRIVLADSKIHILGSYQNIALARRAICNLIMGSPPSKVYGNLRNVANRVAKE 6
           FTIENVT+TRIVLAD K+HILGS+QNI +AR AICNLI+G+PPSKVYGN+R VA+R A  
Sbjct: 192 FTIENVTRTRIVLADVKVHILGSFQNIKMARTAICNLILGNPPSKVYGNIRAVASRSADR 251

Query: 5   Y 3
           +
Sbjct: 252 F 252


>AF164799-1|AAF80763.1|  252|Homo sapiens putatative 28 kDa protein
           protein.
          Length = 252

 Score =  259 bits (635), Expect = 8e-69
 Identities = 124/181 (68%), Positives = 147/181 (81%)
 Frame = -3

Query: 545 KVAMRKVAVPAHRYTPLKESWLKIFTPIVEHLLLQVRFNTKTRNVEIKVGPETKDIANLQ 366
           K   RK+ VPA+RYTPLKE+W+KIFTPIVEHL LQ+RFN K+RNVEI+   ETKD++ L 
Sbjct: 72  KEETRKIPVPANRYTPLKENWMKIFTPIVEHLGLQIRFNLKSRNVEIRTCKETKDVSALT 131

Query: 365 KAADFVKAFIYGFEVXXXXXXXXXXXLFVESFEVKDVKTLNGDHLSRAIGRLAGKAGRTK 186
           KAADFVKAFI GF+V           LF+ESFE+ DVK L GDHLSRAIGR+AGK G+TK
Sbjct: 132 KAADFVKAFILGFQVEDALALIRLDDLFLESFEITDVKPLKGDHLSRAIGRIAGKGGKTK 191

Query: 185 FTIENVTKTRIVLADSKIHILGSYQNIALARRAICNLIMGSPPSKVYGNLRNVANRVAKE 6
           FTIENVT+TRIVLAD K+HILGS+QNI +AR AICNLI+G+PPSKVYGN+R VA+R A  
Sbjct: 192 FTIENVTRTRIVLADVKVHILGSFQNIKMARTAICNLILGNPPSKVYGNIRAVASRSADR 251

Query: 5   Y 3
           +
Sbjct: 252 F 252


>AC017083-2|AAY14714.1|  252|Homo sapiens unknown protein.
          Length = 252

 Score =  259 bits (635), Expect = 8e-69
 Identities = 124/181 (68%), Positives = 147/181 (81%)
 Frame = -3

Query: 545 KVAMRKVAVPAHRYTPLKESWLKIFTPIVEHLLLQVRFNTKTRNVEIKVGPETKDIANLQ 366
           K   RK+ VPA+RYTPLKE+W+KIFTPIVEHL LQ+RFN K+RNVEI+   ETKD++ L 
Sbjct: 72  KEETRKIPVPANRYTPLKENWMKIFTPIVEHLGLQIRFNLKSRNVEIRTCKETKDVSALT 131

Query: 365 KAADFVKAFIYGFEVXXXXXXXXXXXLFVESFEVKDVKTLNGDHLSRAIGRLAGKAGRTK 186
           KAADFVKAFI GF+V           LF+ESFE+ DVK L GDHLSRAIGR+AGK G+TK
Sbjct: 132 KAADFVKAFILGFQVEDALALIRLDDLFLESFEITDVKPLKGDHLSRAIGRIAGKGGKTK 191

Query: 185 FTIENVTKTRIVLADSKIHILGSYQNIALARRAICNLIMGSPPSKVYGNLRNVANRVAKE 6
           FTIENVT+TRIVLAD K+HILGS+QNI +AR AICNLI+G+PPSKVYGN+R VA+R A  
Sbjct: 192 FTIENVTRTRIVLADVKVHILGSFQNIKMARTAICNLILGNPPSKVYGNIRAVASRSADR 251

Query: 5   Y 3
           +
Sbjct: 252 F 252


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,041,119
Number of Sequences: 237096
Number of extensions: 1930943
Number of successful extensions: 3197
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3197
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10928473528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)