Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12i16
         (859 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061304-1|AAL28852.1|  240|Drosophila melanogaster LD21667p pro...   283   2e-76
AF188892-1|AAG17061.1|  240|Drosophila melanogaster potential RN...   283   2e-76
AE014298-3008|AAF50915.1|  240|Drosophila melanogaster CG11738-P...   283   2e-76
AY128479-1|AAM75072.1| 1058|Drosophila melanogaster RE53774p pro...    30   3.5  
AE014296-225|AAF47475.2| 1058|Drosophila melanogaster CG9153-PB,...    30   3.5  
AE014296-224|AAF47474.2| 1058|Drosophila melanogaster CG9153-PA,...    30   3.5  
BT001259-1|AAN71015.1| 1500|Drosophila melanogaster AT02321p pro...    29   8.2  

>AY061304-1|AAL28852.1|  240|Drosophila melanogaster LD21667p
           protein.
          Length = 240

 Score =  283 bits (695), Expect = 2e-76
 Identities = 149/245 (60%), Positives = 173/245 (70%)
 Frame = -3

Query: 743 METENISVDDFLPAKKTMKLKNIKRKATDDTGDGMEVEEPTIGEXXXXXXXXXXXXXXXX 564
           ME ENI  D F PAK+  K +        D    M+V+E T  E                
Sbjct: 1   MEAENIRADAFEPAKRATK-RGASGGGQQDVE--MQVDEATGIEGQVLGSSRASAPPKAK 57

Query: 563 SDPNESKVAMRKVAVPAHRYTPLKESWLKIFTPIVEHLLLQVRFNTKTRNVEIKVGPETK 384
              +E    +RKV+VP HRY+ LKE W+KIFTP+VEH+ LQ+RFN K R VE++VGPET 
Sbjct: 58  RARSE----LRKVSVPPHRYSSLKEHWMKIFTPVVEHMKLQIRFNMKARQVELRVGPETP 113

Query: 383 DIANLQKAADFVKAFIYGFEVXXXXXXXXXXXLFVESFEVKDVKTLNGDHLSRAIGRLAG 204
           DIANLQ+ ADFV+AF+ GFEV           LFVESFE+KDVKTL GDH SRAIGRLAG
Sbjct: 114 DIANLQRGADFVRAFLCGFEVDDALALLRLEDLFVESFEIKDVKTLRGDHQSRAIGRLAG 173

Query: 203 KAGRTKFTIENVTKTRIVLADSKIHILGSYQNIALARRAICNLIMGSPPSKVYGNLRNVA 24
           K GRTKFTIENVTKTRIVLADSKIHILGSYQNI LARRA+CNLI+GSPPSKVYGNLR VA
Sbjct: 174 KGGRTKFTIENVTKTRIVLADSKIHILGSYQNIQLARRAVCNLILGSPPSKVYGNLRAVA 233

Query: 23  NRVAK 9
           +R+++
Sbjct: 234 SRLSE 238


>AF188892-1|AAG17061.1|  240|Drosophila melanogaster potential
           RNA-binding protein protein.
          Length = 240

 Score =  283 bits (695), Expect = 2e-76
 Identities = 149/245 (60%), Positives = 173/245 (70%)
 Frame = -3

Query: 743 METENISVDDFLPAKKTMKLKNIKRKATDDTGDGMEVEEPTIGEXXXXXXXXXXXXXXXX 564
           ME ENI  D F PAK+  K +        D    M+V+E T  E                
Sbjct: 1   MEAENIRADAFEPAKRATK-RGASGGGQQDVE--MQVDEATGIEGQVLGSSRASAPPKAK 57

Query: 563 SDPNESKVAMRKVAVPAHRYTPLKESWLKIFTPIVEHLLLQVRFNTKTRNVEIKVGPETK 384
              +E    +RKV+VP HRY+ LKE W+KIFTP+VEH+ LQ+RFN K R VE++VGPET 
Sbjct: 58  RARSE----LRKVSVPPHRYSSLKEHWMKIFTPVVEHMKLQIRFNMKARQVELRVGPETP 113

Query: 383 DIANLQKAADFVKAFIYGFEVXXXXXXXXXXXLFVESFEVKDVKTLNGDHLSRAIGRLAG 204
           DIANLQ+ ADFV+AF+ GFEV           LFVESFE+KDVKTL GDH SRAIGRLAG
Sbjct: 114 DIANLQRGADFVRAFLCGFEVDDALALLRLEDLFVESFEIKDVKTLRGDHQSRAIGRLAG 173

Query: 203 KAGRTKFTIENVTKTRIVLADSKIHILGSYQNIALARRAICNLIMGSPPSKVYGNLRNVA 24
           K GRTKFTIENVTKTRIVLADSKIHILGSYQNI LARRA+CNLI+GSPPSKVYGNLR VA
Sbjct: 174 KGGRTKFTIENVTKTRIVLADSKIHILGSYQNIQLARRAVCNLILGSPPSKVYGNLRAVA 233

Query: 23  NRVAK 9
           +R+++
Sbjct: 234 SRLSE 238


>AE014298-3008|AAF50915.1|  240|Drosophila melanogaster CG11738-PA
           protein.
          Length = 240

 Score =  283 bits (695), Expect = 2e-76
 Identities = 149/245 (60%), Positives = 173/245 (70%)
 Frame = -3

Query: 743 METENISVDDFLPAKKTMKLKNIKRKATDDTGDGMEVEEPTIGEXXXXXXXXXXXXXXXX 564
           ME ENI  D F PAK+  K +        D    M+V+E T  E                
Sbjct: 1   MEAENIRADAFEPAKRATK-RGASGGGQQDVE--MQVDEATGIEGQVLGSSRASAPPKAK 57

Query: 563 SDPNESKVAMRKVAVPAHRYTPLKESWLKIFTPIVEHLLLQVRFNTKTRNVEIKVGPETK 384
              +E    +RKV+VP HRY+ LKE W+KIFTP+VEH+ LQ+RFN K R VE++VGPET 
Sbjct: 58  RARSE----LRKVSVPPHRYSSLKEHWMKIFTPVVEHMKLQIRFNMKARQVELRVGPETP 113

Query: 383 DIANLQKAADFVKAFIYGFEVXXXXXXXXXXXLFVESFEVKDVKTLNGDHLSRAIGRLAG 204
           DIANLQ+ ADFV+AF+ GFEV           LFVESFE+KDVKTL GDH SRAIGRLAG
Sbjct: 114 DIANLQRGADFVRAFLCGFEVDDALALLRLEDLFVESFEIKDVKTLRGDHQSRAIGRLAG 173

Query: 203 KAGRTKFTIENVTKTRIVLADSKIHILGSYQNIALARRAICNLIMGSPPSKVYGNLRNVA 24
           K GRTKFTIENVTKTRIVLADSKIHILGSYQNI LARRA+CNLI+GSPPSKVYGNLR VA
Sbjct: 174 KGGRTKFTIENVTKTRIVLADSKIHILGSYQNIQLARRAVCNLILGSPPSKVYGNLRAVA 233

Query: 23  NRVAK 9
           +R+++
Sbjct: 234 SRLSE 238


>AY128479-1|AAM75072.1| 1058|Drosophila melanogaster RE53774p
           protein.
          Length = 1058

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 591 SRLLWIAFPNCGLFNLHTISGVICSFALYIFKLHRL 698
           SRLLW A       N++ + GV+C  A+Y F +  L
Sbjct: 781 SRLLWFADLTFETENMYFLIGVLCGLAIYNFTIINL 816


>AE014296-225|AAF47475.2| 1058|Drosophila melanogaster CG9153-PB,
           isoform B protein.
          Length = 1058

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 591 SRLLWIAFPNCGLFNLHTISGVICSFALYIFKLHRL 698
           SRLLW A       N++ + GV+C  A+Y F +  L
Sbjct: 781 SRLLWFADLTFETENMYFLIGVLCGLAIYNFTIINL 816


>AE014296-224|AAF47474.2| 1058|Drosophila melanogaster CG9153-PA,
           isoform A protein.
          Length = 1058

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 591 SRLLWIAFPNCGLFNLHTISGVICSFALYIFKLHRL 698
           SRLLW A       N++ + GV+C  A+Y F +  L
Sbjct: 781 SRLLWFADLTFETENMYFLIGVLCGLAIYNFTIINL 816


>BT001259-1|AAN71015.1| 1500|Drosophila melanogaster AT02321p
           protein.
          Length = 1500

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 21/50 (42%), Positives = 24/50 (48%)
 Frame = -3

Query: 761 DEPSHKMETENISVDDFLPAKKTMKLKNIKRKATDDTGDGMEVEEPTIGE 612
           +EP  K E ENIS  D   A K   L     KA   TGDG   E+ T+ E
Sbjct: 473 EEPVLKSEDENIS--DHEMAMKIAVLDIKDDKALHSTGDGESKEKDTLEE 520


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,873,195
Number of Sequences: 53049
Number of extensions: 592682
Number of successful extensions: 1542
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1539
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4126982652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)