Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12i16
         (859 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99278-2|CAB16491.1|  277|Caenorhabditis elegans Hypothetical pr...   224   5e-59
Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p...    29   5.6  
U88314-4|AAK71360.1|  494|Caenorhabditis elegans Let-23 fertilit...    29   5.6  
U88314-3|AAK71361.1|  394|Caenorhabditis elegans Let-23 fertilit...    29   5.6  
U88314-2|AAF99884.2|  461|Caenorhabditis elegans Let-23 fertilit...    29   5.6  
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical...    29   5.6  
AF045613-1|AAC38962.1|  461|Caenorhabditis elegans inositol tris...    29   5.6  
AF045612-1|AAC38961.1|  394|Caenorhabditis elegans inositol tris...    29   5.6  
AF045611-1|AAC38960.1|  494|Caenorhabditis elegans inositol tris...    29   5.6  
AL021175-5|CAA15967.1|  357|Caenorhabditis elegans Hypothetical ...    28   7.4  
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr...    28   9.8  
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr...    28   9.8  
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p...    28   9.8  
AC006722-6|AAK68411.2|  488|Caenorhabditis elegans Hypothetical ...    28   9.8  
AC006645-11|AAF39850.1|  472|Caenorhabditis elegans Hypothetical...    28   9.8  

>Z99278-2|CAB16491.1|  277|Caenorhabditis elegans Hypothetical
           protein Y53C12B.2 protein.
          Length = 277

 Score =  224 bits (548), Expect = 5e-59
 Identities = 111/176 (63%), Positives = 138/176 (78%), Gaps = 1/176 (0%)
 Frame = -3

Query: 533 RKVAVPAHRYTPLKESWLKIFTPIVEHLLLQVRFNTKTRNVEIKVGPETKDIANLQKAAD 354
           R V VP HRYTPLK++W+ IFTPIV++L LQVRFN K R VEI+   + +D  +LQKA D
Sbjct: 100 RVVPVPKHRYTPLKDNWVNIFTPIVKNLGLQVRFNLKKRQVEIRNPVDREDTTDLQKATD 159

Query: 353 FVKAFIYGFEVXXXXXXXXXXXLFVESFEVKDVK-TLNGDHLSRAIGRLAGKAGRTKFTI 177
           FV+AFI GFEV           LF+E+FEV DVK +L GDH+SRAIGR+AGK GRTK  I
Sbjct: 160 FVRAFILGFEVNDAIALIRLDHLFLETFEVADVKHSLKGDHVSRAIGRIAGKDGRTKLVI 219

Query: 176 ENVTKTRIVLADSKIHILGSYQNIALARRAICNLIMGSPPSKVYGNLRNVANRVAK 9
           EN TKTRIV+A++KIHILG+YQN+ LAR A+C+LI+GS PSKVYG+LRN+A+R A+
Sbjct: 220 ENTTKTRIVVANTKIHILGAYQNLKLARNAVCSLILGSNPSKVYGSLRNMASRGAE 275


>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
            protein H38K22.1 protein.
          Length = 1570

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 698  KTMKLKNIKRKATDDTGDGMEVEEPTI 618
            KT K K+   K +DD GD M+V+ P +
Sbjct: 1307 KTTKRKSGGSKISDDEGDSMDVKSPAV 1333


>U88314-4|AAK71360.1|  494|Caenorhabditis elegans Let-23 fertility
           effector/regulatorprotein 2, isoform a protein.
          Length = 494

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -3

Query: 461 VEHLLLQVRFNTKTRNVEIKVGPET---KDIANLQKAADFVKAFI 336
           +E LL Q    TKT  ++IK+G  T    +++N +K AD  +  +
Sbjct: 259 IEDLLQQFHDPTKTAIMDIKIGTRTFLESEVSNTKKRADLYEKMV 303


>U88314-3|AAK71361.1|  394|Caenorhabditis elegans Let-23 fertility
           effector/regulatorprotein 2, isoform b protein.
          Length = 394

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -3

Query: 461 VEHLLLQVRFNTKTRNVEIKVGPET---KDIANLQKAADFVKAFI 336
           +E LL Q    TKT  ++IK+G  T    +++N +K AD  +  +
Sbjct: 159 IEDLLQQFHDPTKTAIMDIKIGTRTFLESEVSNTKKRADLYEKMV 203


>U88314-2|AAF99884.2|  461|Caenorhabditis elegans Let-23 fertility
           effector/regulatorprotein 2, isoform c protein.
          Length = 461

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -3

Query: 461 VEHLLLQVRFNTKTRNVEIKVGPET---KDIANLQKAADFVKAFI 336
           +E LL Q    TKT  ++IK+G  T    +++N +K AD  +  +
Sbjct: 226 IEDLLQQFHDPTKTAIMDIKIGTRTFLESEVSNTKKRADLYEKMV 270


>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
            protein H38K22.1 protein.
          Length = 1570

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 698  KTMKLKNIKRKATDDTGDGMEVEEPTI 618
            KT K K+   K +DD GD M+V+ P +
Sbjct: 1307 KTTKRKSGGSKISDDEGDSMDVKSPAV 1333


>AF045613-1|AAC38962.1|  461|Caenorhabditis elegans inositol
           trisphosphate 3-kinaseform 3 protein.
          Length = 461

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -3

Query: 461 VEHLLLQVRFNTKTRNVEIKVGPET---KDIANLQKAADFVKAFI 336
           +E LL Q    TKT  ++IK+G  T    +++N +K AD  +  +
Sbjct: 226 IEDLLQQFHDPTKTAIMDIKIGTRTFLESEVSNTKKRADLYEKMV 270


>AF045612-1|AAC38961.1|  394|Caenorhabditis elegans inositol
           trisphosphate 3-kinaseform 2 protein.
          Length = 394

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -3

Query: 461 VEHLLLQVRFNTKTRNVEIKVGPET---KDIANLQKAADFVKAFI 336
           +E LL Q    TKT  ++IK+G  T    +++N +K AD  +  +
Sbjct: 159 IEDLLQQFHDPTKTAIMDIKIGTRTFLESEVSNTKKRADLYEKMV 203


>AF045611-1|AAC38960.1|  494|Caenorhabditis elegans inositol
           trisphosphate 3-kinaseform 1 protein.
          Length = 494

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -3

Query: 461 VEHLLLQVRFNTKTRNVEIKVGPET---KDIANLQKAADFVKAFI 336
           +E LL Q    TKT  ++IK+G  T    +++N +K AD  +  +
Sbjct: 259 IEDLLQQFHDPTKTAIMDIKIGTRTFLESEVSNTKKRADLYEKMV 303


>AL021175-5|CAA15967.1|  357|Caenorhabditis elegans Hypothetical
           protein Y6E2A.6 protein.
          Length = 357

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 315 IINFKTIYESLYKISSFL*ICNIFCFWSDFYLNI 416
           II FKT  +++ K+   + + ++ CFW D Y NI
Sbjct: 36  IIVFKTP-KNMEKVKISILLMHLTCFWLDIYFNI 68


>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
            F25F2.2 protein.
          Length = 4307

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 615  PNCGLFNLHTISGVICSFALYIFKL-HR 695
            PNC  F +HT+SG +   A ++ KL HR
Sbjct: 1624 PNCTFFEVHTLSGAV-HLATWLTKLKHR 1650


>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
            F25F2.2 protein.
          Length = 4307

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 615  PNCGLFNLHTISGVICSFALYIFKL-HR 695
            PNC  F +HT+SG +   A ++ KL HR
Sbjct: 1624 PNCTFFEVHTLSGAV-HLATWLTKLKHR 1650


>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
            protein F25F2.2 protein.
          Length = 4307

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 615  PNCGLFNLHTISGVICSFALYIFKL-HR 695
            PNC  F +HT+SG +   A ++ KL HR
Sbjct: 1624 PNCTFFEVHTLSGAV-HLATWLTKLKHR 1650


>AC006722-6|AAK68411.2|  488|Caenorhabditis elegans Hypothetical
           protein Y19D10A.11 protein.
          Length = 488

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 624 GLFNLHTISGVICSFALYIFKL 689
           GL N+ TISG+I +F  ++F L
Sbjct: 131 GLGNVQTISGIISAFGAFLFPL 152


>AC006645-11|AAF39850.1|  472|Caenorhabditis elegans Hypothetical
           protein F56A4.12 protein.
          Length = 472

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 624 GLFNLHTISGVICSFALYIFKL 689
           GL N+ TISG+I +F  ++F L
Sbjct: 115 GLGNVQTISGIISAFGAFLFPL 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,969,483
Number of Sequences: 27780
Number of extensions: 322927
Number of successful extensions: 843
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)