Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12i11
         (922 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    31   0.23 
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc...    28   1.6  
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    27   4.9  
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch...    27   4.9  
SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces pombe...    27   4.9  
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    26   8.6  
SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   8.6  
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    26   8.6  

>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 20/62 (32%), Positives = 32/62 (51%)
 Frame = -2

Query: 606 GEMSREIILDRYSVDNYRKLYIKMEITNQFPVMYDHESSYIFVSKDILQLKGTMNAFYAP 427
           G  ++ +IL+     NY +    + ++N  P++    SSY  VSK+   L   +NA  AP
Sbjct: 315 GRDNKGLILNELWAFNYSQQRWSL-VSNPIPILLSDSSSYKIVSKNNHILLLYLNALDAP 373

Query: 426 KQ 421
           KQ
Sbjct: 374 KQ 375


>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 849 KLKYT-VVNSTKIVTRKPNDIFNEIDKELNGNCPFIKFIQRD 727
           K+ +T   N  KI+ ++ +    ++  EL GN PFI F   D
Sbjct: 242 KVSFTGSTNVGKILAKQSSSTLKKLSLELGGNAPFIVFEDAD 283


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -2

Query: 342 YRQSSPPVRLTGDVYVVDKNEKVFLVKHVFSNTVPAYLLIRG 217
           Y     P R TG+V  +D+N K  +V  +++    A + + G
Sbjct: 401 YNMGGIPTRFTGEVLTIDENGKDKIVPGLYAAGEAACVSVHG 442


>SPBC365.02c |cox10||protoheme IX
           farnesyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 387

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 216 HLLLKDMQAPCLRTRV*LKKLFRSYQQHTRRPS 314
           H+L K     C+ TR  LK+ +  + +HT + S
Sbjct: 3   HILNKGSSKSCIYTRPCLKRFYHQHYEHTGKLS 35


>SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 233

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = -2

Query: 297 VVDKNEKVFLVKHVFSNTVPAYLLI 223
           V D +++VF+V H+F +++PA  L+
Sbjct: 101 VTDASKEVFVVVHMFQDSLPACKLL 125


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
 Frame = -2

Query: 690 DLLNEYMTKSSIMKIITKFVIEENP--AMNGEMSREIILDRY--SVDNYRKLYIKMEITN 523
           D  N Y T    M    KFVI ++P    +   S E  +D Y    ++   ++  M +TN
Sbjct: 378 DQSNPYYTVIKTMVAFRKFVITQDPDWVTSTYQSIESAVDHYVGQKNDVLVMFNNMGVTN 437

Query: 522 QFPVMYDHESSY 487
              + Y+ E++Y
Sbjct: 438 NLTI-YEVETNY 448


>SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 263

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
 Frame = -2

Query: 687 LLNEYMTKSSIMKIITKFVIEENPAMN-----GEMSREIILDRYSVDNYRKLYIK 538
           +L+E + K    K +  F+I E+P++N      E ++E I     V + RK Y++
Sbjct: 58  VLDETLPKKGYEKALHSFIIHEDPSLNYISALKETAKERIRVTVPVYSSRKSYVQ 112


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 696 LLDLLNEYMTKSSIMKIITKFVIEE 622
           L+D   E M   SI+ IITK++IE+
Sbjct: 38  LVDRSIERMESCSIINIITKYIIEQ 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,703,588
Number of Sequences: 5004
Number of extensions: 77308
Number of successful extensions: 212
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)