Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12i11
         (922 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0113 + 14550435-14550822,14550831-14551660,14552105-145522...    31   0.97 
06_01_0996 + 7746358-7746493,7747102-7747262,7747586-7747647,774...    29   3.9  
04_03_0128 - 11530618-11530838,11532683-11532809,11533746-115338...    29   3.9  
04_04_0224 - 23738105-23738273,23738364-23738472,23738702-237388...    28   9.1  

>03_03_0113 +
           14550435-14550822,14550831-14551660,14552105-14552278,
           14552350-14552517
          Length = 519

 Score = 31.5 bits (68), Expect = 0.97
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 457 QLQNVFAHKNVRRFMIIH-DRKLVGYFHFYVQLAIIVYRV 573
           Q    +AH    RF I+H   K VG++++  QLA  V+RV
Sbjct: 155 QFVGAYAHPATGRFHILHASGKTVGHYYYRKQLAPAVFRV 194


>06_01_0996 +
           7746358-7746493,7747102-7747262,7747586-7747647,
           7748142-7748595,7748994-7749134,7749444-7749633,
           7749842-7750530,7750605-7750804,7751210-7751375,
           7751850-7752046,7752162-7752396
          Length = 876

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +1

Query: 547 QLAIIVYRVAIKNNLARHFTVHSGVFFN--HKLGNYFHDRAFGHVFV 681
           +LA+IV    IK+N  R F    G FF    KLGN  +D+A GH F+
Sbjct: 710 ELALIVLSADIKDNSKRIFPAIIGAFFPILQKLGN-GNDKA-GHYFM 754


>04_03_0128 -
           11530618-11530838,11532683-11532809,11533746-11533892,
           11533981-11534082,11534207-11534332,11535507-11535584,
           11535780-11535827,11536005-11536193
          Length = 345

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +2

Query: 173 FKSRRDFNSDELS*SPL-IKRYAGTVFENTCLTKKTFSFLSTTYTSPVKR 319
           +KS    +SD+LS S   +K+  G + + TC TKK+ SF   T   PV R
Sbjct: 271 YKSEDGDSSDDLSDSSSEVKKNKGKLEKTTCKTKKSVSF--NTAKRPVGR 318


>04_04_0224 -
           23738105-23738273,23738364-23738472,23738702-23738804,
           23738895-23738926,23739342-23739592,23739639-23739754,
           23740271-23740526,23740760-23740847,23740985-23741062,
           23741238-23741313,23741532-23741590,23742639-23742711
          Length = 469

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +3

Query: 174 LNREGISTQTNFRNHLLLKDMQ 239
           +NREGIS   N  N LLLK +Q
Sbjct: 77  INREGISYYNNLINELLLKGVQ 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,676,965
Number of Sequences: 37544
Number of extensions: 438084
Number of successful extensions: 921
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)