Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12i10
         (571 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0181 - 28225396-28225587,28226009-28226068,28226150-282264...    29   2.0  
02_02_0700 + 13058446-13058790,13059352-13059582,13060083-130602...    28   6.0  
05_03_0001 - 7269231-7269436,7269536-7270100,7270600-7270821,727...    27   8.0  

>05_07_0181 -
           28225396-28225587,28226009-28226068,28226150-28226416,
           28227167-28227232,28228164-28228963,28229565-28229673,
           28230391-28232097
          Length = 1066

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 445 GAISSGTCLCTVKKRFLVSRPFY 513
           GA+  G   CTV++RF  + PFY
Sbjct: 491 GALWQGNSSCTVRERFKAAEPFY 513


>02_02_0700 +
           13058446-13058790,13059352-13059582,13060083-13060241,
           13060483-13060635,13061619-13061702,13061847-13061915,
           13062374-13062421,13062487-13062621
          Length = 407

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 462 HMFVYSEETFSSFTTILLICQSA 530
           HM +YS  +F S  TI  ICQ A
Sbjct: 349 HMHIYSLLSFCSINTIAAICQEA 371


>05_03_0001 -
           7269231-7269436,7269536-7270100,7270600-7270821,
           7270913-7271155,7271227-7271481,7272017-7272370,
           7273082-7273164,7273250-7273630,7273874-7274027
          Length = 820

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 176 ASKLHSLLGCMDRSRLFIFRKRGQGQ 253
           A  L SLL C D  R+ + RK+  GQ
Sbjct: 446 ADFLRSLLNCNDNGRIIVARKKFSGQ 471


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,153,454
Number of Sequences: 37544
Number of extensions: 239316
Number of successful extensions: 541
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)