Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12i07
         (833 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1781 + 29468919-29468951,29469057-29469184,29469349-294694...    33   0.28 
05_05_0360 - 24395993-24397540,24397626-24397730,24398731-24399111     29   6.0  

>07_03_1781 +
           29468919-29468951,29469057-29469184,29469349-29469433,
           29469771-29469824,29470072-29470163,29470280-29470383,
           29470811-29470886,29471231-29471678,29471874-29471916,
           29471977-29472209,29472302-29472505,29472595-29472693,
           29472789-29472861,29473373-29473500,29473614-29473836,
           29473992-29474215,29474296-29474423,29475053-29475167,
           29475603-29475658,29475795-29475888,29475966-29476152,
           29476229-29476309,29476384-29476484,29476567-29476629,
           29476800-29476907
          Length = 1059

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
 Frame = -2

Query: 655 NQIFTIYNIKCQQIFNGANVYM-NWNVVNSTRIELCEAKENEAYSNLQNCTNARINISRS 479
           NQ+  ++ + C    N   V + N+NVV S        ++ E+  + ++  N  +++++ 
Sbjct: 607 NQLSIMFTVDCASGTNSPVVSLSNYNVVTSAA--KANEQQKESLQSAKSPANVLLSLTKD 664

Query: 478 NKRVASYNVNMLKSELEENDMSDNKF 401
                  ++N   SE E+N +S++KF
Sbjct: 665 GHFTVHDSMNDGTSEEEQNQLSEDKF 690


>05_05_0360 - 24395993-24397540,24397626-24397730,24398731-24399111
          Length = 677

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/56 (23%), Positives = 28/56 (50%)
 Frame = -2

Query: 547 AKENEAYSNLQNCTNARINISRSNKRVASYNVNMLKSELEENDMSDNKFIVQFKSD 380
           +KEN+   N+ +     +N  R N++ A    + L SEL E   +  +++  ++ +
Sbjct: 251 SKENDKVRNILDAVKEELNRERKNRQRAEIMNSKLVSELSELKSAAKRYLQDYEKE 306


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,541,677
Number of Sequences: 37544
Number of extensions: 337875
Number of successful extensions: 732
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)