Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12i07
(833 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117193-9|CAB60302.2| 737|Caenorhabditis elegans Hypothetical ... 29 4.1
DQ340626-1|ABC65814.1| 782|Caenorhabditis elegans chondroitin p... 28 7.2
AF022968-9|AAB69883.3| 782|Caenorhabditis elegans Chondroitin p... 28 7.2
U23525-10|AAC46571.2| 503|Caenorhabditis elegans Hypothetical p... 28 9.5
U23525-9|ABC71820.1| 766|Caenorhabditis elegans Hypothetical pr... 28 9.5
AL033514-34|CAA22113.1| 463|Caenorhabditis elegans Hypothetical... 28 9.5
AL033514-33|CAB54500.1| 480|Caenorhabditis elegans Hypothetical... 28 9.5
AF160493-1|AAD43348.1| 465|Caenorhabditis elegans DNA-binding p... 28 9.5
AF160492-1|AAD43347.1| 463|Caenorhabditis elegans DNA-binding p... 28 9.5
>AL117193-9|CAB60302.2| 737|Caenorhabditis elegans Hypothetical
protein Y105C5A.15 protein.
Length = 737
Score = 29.1 bits (62), Expect = 4.1
Identities = 24/116 (20%), Positives = 61/116 (52%), Gaps = 3/116 (2%)
Frame = -2
Query: 760 VECFVNAKTLMNLFKNNIKG-SDDI-NEVFKYLKDNENQIFTI-YNIKCQQIFNGANVYM 590
++ F + +T+ + + +++ +DD+ NE+ + + + T+ Y+ + ++ +G+ +
Sbjct: 330 IDAFPDIQTVRSAMQTHLRFCADDLKNELSRTTQGCRLALETLTYSGRDYRVIHGSRISP 389
Query: 589 NWNVVNSTRIELCEAKENEAYSNLQNCTNARINISRSNKRVASYNVNMLKSELEEN 422
+W S + + +AKENE+ + + N ++R+ R+ N N ++LE N
Sbjct: 390 DWKW-RSNILGVFKAKENESLNEMINLVVHNYELNRTFLRITIPNSN---NDLEGN 441
>DQ340626-1|ABC65814.1| 782|Caenorhabditis elegans chondroitin
proteoglycan-4 protein.
Length = 782
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 817 KIVFEVAYKNFNDDSDVVQVECFVNAKTLMNLFKN 713
K+ F K +D++ VVQ EC +T NLF N
Sbjct: 204 KLAFNATIKCIDDEAGVVQSECDTQCQT-KNLFMN 237
>AF022968-9|AAB69883.3| 782|Caenorhabditis elegans Chondroitin
proteoglycan protein 4 protein.
Length = 782
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 817 KIVFEVAYKNFNDDSDVVQVECFVNAKTLMNLFKN 713
K+ F K +D++ VVQ EC +T NLF N
Sbjct: 204 KLAFNATIKCIDDEAGVVQSECDTQCQT-KNLFMN 237
>U23525-10|AAC46571.2| 503|Caenorhabditis elegans Hypothetical
protein K11G12.6a protein.
Length = 503
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 813 LFLKSRTKILTTIPTWFKWNVLSMRKH 733
+F+ TK+L+ PTW WN+ ++ H
Sbjct: 43 VFMNGATKLLSKCPTW--WNLTALNYH 67
>U23525-9|ABC71820.1| 766|Caenorhabditis elegans Hypothetical
protein K11G12.6b protein.
Length = 766
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 813 LFLKSRTKILTTIPTWFKWNVLSMRKH 733
+F+ TK+L+ PTW WN+ ++ H
Sbjct: 306 VFMNGATKLLSKCPTW--WNLTALNYH 330
>AL033514-34|CAA22113.1| 463|Caenorhabditis elegans Hypothetical
protein Y75B8A.35b protein.
Length = 463
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/63 (20%), Positives = 28/63 (44%)
Frame = -2
Query: 568 TRIELCEAKENEAYSNLQNCTNARINISRSNKRVASYNVNMLKSELEENDMSDNKFIVQF 389
T E E K+ + +N +NC R N K+ ++ +N+M +N + +
Sbjct: 261 TEKEKLERKKEQNRANAKNCVKNRNNSKEELKQTLEMLREKVQEAKRQNEMQENGLLAAY 320
Query: 388 KSD 380
+++
Sbjct: 321 ETN 323
>AL033514-33|CAB54500.1| 480|Caenorhabditis elegans Hypothetical
protein Y75B8A.35a protein.
Length = 480
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/63 (20%), Positives = 28/63 (44%)
Frame = -2
Query: 568 TRIELCEAKENEAYSNLQNCTNARINISRSNKRVASYNVNMLKSELEENDMSDNKFIVQF 389
T E E K+ + +N +NC R N K+ ++ +N+M +N + +
Sbjct: 278 TEKEKLERKKEQNRANAKNCVKNRNNSKEELKQTLEMLREKVQEAKRQNEMQENGLLAAY 337
Query: 388 KSD 380
+++
Sbjct: 338 ETN 340
>AF160493-1|AAD43348.1| 465|Caenorhabditis elegans DNA-binding
protein ZIP-1 protein.
Length = 465
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/63 (20%), Positives = 28/63 (44%)
Frame = -2
Query: 568 TRIELCEAKENEAYSNLQNCTNARINISRSNKRVASYNVNMLKSELEENDMSDNKFIVQF 389
T E E K+ + +N +NC R N K+ ++ +N+M +N + +
Sbjct: 278 TEKEKLERKKEQNRANAKNCVKNRNNSKEELKQTLEMLREKVQEAKRQNEMQENGLLAAY 337
Query: 388 KSD 380
+++
Sbjct: 338 ETN 340
>AF160492-1|AAD43347.1| 463|Caenorhabditis elegans DNA-binding
protein ZIP-1 protein.
Length = 463
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/63 (20%), Positives = 28/63 (44%)
Frame = -2
Query: 568 TRIELCEAKENEAYSNLQNCTNARINISRSNKRVASYNVNMLKSELEENDMSDNKFIVQF 389
T E E K+ + +N +NC R N K+ ++ +N+M +N + +
Sbjct: 261 TEKEKLERKKEQNRANAKNCVKNRNNSKEELKQTLEMLREKVQEAKRQNEMQENGLLAAY 320
Query: 388 KSD 380
+++
Sbjct: 321 ETN 323
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,617,464
Number of Sequences: 27780
Number of extensions: 353210
Number of successful extensions: 1110
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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