Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12i05
         (847 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0090 + 25461568-25462059                                         30   2.7  
02_05_1174 + 34692085-34692283,34693336-34693622,34693995-34694504     29   3.5  
08_02_1461 - 27299891-27301870                                         29   4.7  

>05_06_0090 + 25461568-25462059
          Length = 163

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 633 RNRNALLLHDRNRRGGGTHPR 695
           R+R  +LLHD  RR GG H R
Sbjct: 28  RSRRRILLHDHGRRRGGGHAR 48


>02_05_1174 + 34692085-34692283,34693336-34693622,34693995-34694504
          Length = 331

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
 Frame = +1

Query: 511 RAHSPLGVK--WLLEPIDIHNINAPPTLRYKF*GLKYSYNTCPETETHYCFTTEIGGVVV 684
           R  +P GVK  W++    + N + PP   +    + Y      ETE+ Y    E   V+ 
Sbjct: 136 RGRAPNGVKTNWVMHEFRMENPHTPPKEDWVLCRVFYKKKAETETESSYSMENEQEAVIA 195

Query: 685 PTRADSQEVLSQVGNYANYNFS 750
             R  S   +   G Y+N + S
Sbjct: 196 MAR--SAAAIKAGGCYSNSSSS 215


>08_02_1461 - 27299891-27301870
          Length = 659

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = +3

Query: 651 LLHDRNRRGGGTHPRGLTRGPITSR 725
           LL  R R GGG H RGL   P+ SR
Sbjct: 290 LLRGRRRGGGGGHRRGLFVFPLVSR 314


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,497,360
Number of Sequences: 37544
Number of extensions: 516960
Number of successful extensions: 984
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)