Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12h21
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    32   0.094
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    29   0.66 

>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 32.3 bits (70), Expect = 0.094
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -3

Query: 598 ESCLLLQRTCRQDRNLAQSDVNICSRDPLLAND-SPLLTNMC 476
           E   L  +TC   R+L Q   NI   DPL+ ND  P L  +C
Sbjct: 258 EERFLFTKTCNVFRSLIQIQKNIMKEDPLIRNDYEPQLLPIC 299


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 17/67 (25%), Positives = 26/67 (38%)
 Frame = -2

Query: 866 TKQTRSNAVRPKLPRDQRAHARRCSKRTAAKPPFT*SHENLESSRSGHTLGRRRLSFVYR 687
           T    +N       +D R+ A   S+  +  P      +  E +RS H  G  R    YR
Sbjct: 100 TSSKAANRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKERTRSNHRHGSHRRHEPYR 159

Query: 686 RHISTRY 666
            H+S  +
Sbjct: 160 THLSRHH 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,303,141
Number of Sequences: 5004
Number of extensions: 65195
Number of successful extensions: 163
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)