Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12h21
         (879 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0201 + 26687369-26689228                                         31   1.6  
06_03_0077 + 16284106-16284128,16284552-16284795,16285490-162855...    29   4.9  
05_05_0057 + 21995018-21997006                                         29   4.9  

>02_05_0201 + 26687369-26689228
          Length = 619

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 705 PPPAKSMPTPATFKVLM*LCKRGFCC 782
           PPP +  P P T++    +CK+GF C
Sbjct: 23  PPPPQPPPPPLTYRHHCKVCKKGFMC 48


>06_03_0077 +
           16284106-16284128,16284552-16284795,16285490-16285591,
           16286347-16287057
          Length = 359

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = -2

Query: 851 SNAVRPKLPRDQRAHARRCSKRTAAKPPFT*SHENLESSRSGHTLGRRRLS 699
           S    P+L  D  A A R  + TA + PF  +H  +E   +G   GRRR S
Sbjct: 46  SRTKSPRLVLDHLAKAYRVLETTAQEAPFELNHLYVEMGSAGDK-GRRRRS 95


>05_05_0057 + 21995018-21997006
          Length = 662

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
 Frame = -2

Query: 824 RDQRAHARRCSKRTAAKPPFT*SHENLESSR------SGHTLGRRRLSFVYRRHISTRYN 663
           R   A  +RC+   +A+  F+ +   L SSR      +G+ + RRR      R+ S RY+
Sbjct: 555 RGCNARMQRCNSNASARSSFSSNSGGLGSSRRSYVDGNGNVVKRRREECALERNRSARYS 614

Query: 662 QRHQ*N 645
             H  N
Sbjct: 615 PGHADN 620


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,322,129
Number of Sequences: 37544
Number of extensions: 459216
Number of successful extensions: 1023
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)