Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12h21
         (879 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    23   3.7  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   6.5  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   6.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   6.5  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   6.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.5  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   8.6  

>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 95  INNGPSSIIKDKNNIKYMYN*LNSKDMYNXN 3
           I++  +  I + NN KY YN    K  YN N
Sbjct: 82  ISSLSNKTIHNNNNYKYNYNNNCKKLYYNIN 112


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 282 TKPSLPSNQSKPKSP 326
           TKP  P  ++KP SP
Sbjct: 248 TKPPKPQTKTKPTSP 262


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 651 IEPAEVIMCKVETPEKTSSPVCY 583
           +EP+E+   K+ET   +  P  Y
Sbjct: 571 LEPSEIFYEKIETSLNSDKPFTY 593


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 651 IEPAEVIMCKVETPEKTSSPVCY 583
           +EP+E+   K+ET   +  P  Y
Sbjct: 571 LEPSEIFYEKIETSLNSDKPFTY 593


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 232 WALFCCGCRHYCWTICRLNLLFPVTNL 312
           W +  C    + W +C L LL  V NL
Sbjct: 79  WVIHPCSSFRFYWDLCMLLLL--VANL 103


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 232 WALFCCGCRHYCWTICRLNLLFPVTNL 312
           W +  C    + W +C L LL  V NL
Sbjct: 79  WVIHPCSSFRFYWDLCMLLLL--VANL 103


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 232 WALFCCGCRHYCWTICRLNLLFPVTNL 312
           W +  C    + W +C L LL  V NL
Sbjct: 79  WVIHPCSSFRFYWDLCMLLLL--VANL 103


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -2

Query: 863 KQTRSNAVRPKLPRDQRAHARRCSKRTAAKPP 768
           K   S     +L +++RAH R C ++     P
Sbjct: 45  KSQGSRTTHNELEKNRRAHLRNCLEKLKVLVP 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,535
Number of Sequences: 438
Number of extensions: 4793
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)