Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12h20
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    29   1.1  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    28   1.5  
SPBC409.03 |swi5||Swi5 protein|Schizosaccharomyces pombe|chr 2||...    28   1.5  
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz...    28   2.0  
SPBC13G1.02 |||mannose-1-phosphate guanyltransferase |Schizosacc...    27   3.4  
SPAC31G5.11 |pac2||cAMP-independent regulatory protein Pac2 |Sch...    27   4.5  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    26   7.9  

>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -1

Query: 460 CEQWGKHVSSARLMCSKSVQ*TSPLLRYGLNSCFISFS-SSVWCTVGSVCST 308
           CE +G +V  A +   K VQ     L+YGL + F+S + + ++  VG +C T
Sbjct: 155 CEIFGLYV--AFIYLEKGVQVLCDQLKYGLTNTFLSITIALLFLMVGWLCDT 204


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = +2

Query: 671 NCKDAVSRHVDKKYKYTYSESGARLPPSAPNSVAKQGDPLYLQPHTVLITKSGVIQLIMK 850
           N K  VS+  +K+ K+ Y E   +   S  + V K    + L P  +  TK+G+ Q+I++
Sbjct: 646 NKKRKVSQKREKQKKFLYDEPTFKKEASPHSDVLKNLHFVVLPPTELHETKAGLQQIIIE 705

Query: 851 S 853
           +
Sbjct: 706 N 706


>SPBC409.03 |swi5||Swi5 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 85

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 599 YVLEQGNPQVKFVAKDIASSLKYGNCKDAVSRHVDKKYKY 718
           ++LEQ   Q++   +D  + LK  + K  V +H+D  + Y
Sbjct: 11  HLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTY 50


>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 499

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/65 (21%), Positives = 29/65 (44%)
 Frame = +2

Query: 662 KYGNCKDAVSRHVDKKYKYTYSESGARLPPSAPNSVAKQGDPLYLQPHTVLITKSGVIQL 841
           KY  CK  +S     +Y   + +S   +P +AP+ + +   P +      L+    + +L
Sbjct: 172 KYAGCKIDISTFEQSRYPRVFVDSQLPVPKAAPSPIEEWYPPGHGDIFDALVHSGTIERL 231

Query: 842 IMKSK 856
           + + K
Sbjct: 232 LAQGK 236


>SPBC13G1.02 |||mannose-1-phosphate guanyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 414

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 359 ETRVETVPQQRRGLLHGFRAHQARARDVLAPLLAKLIRSV 478
           E R+E V +Q R L  G   + +   DVLAPL +   +++
Sbjct: 201 ERRLEEVEKQLRSLDEGMEDYLSLETDVLAPLCSDSSKAI 240


>SPAC31G5.11 |pac2||cAMP-independent regulatory protein Pac2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 209 VQQRRGRIEMALDGSGIKLYCRLGVLEQAQRRLS 108
           +Q   G I+  LD   +   CR+G+L + QRRLS
Sbjct: 1   MQTYTGIIKTPLDAIILFEACRIGLLPRVQRRLS 34


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 60  ELQNWFYEHVLPQCTARQSALSLLQDA 140
           E+QNW++EH    C     A +  Q+A
Sbjct: 190 EIQNWYFEHHTELCLLIHHAEARAQEA 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,330,156
Number of Sequences: 5004
Number of extensions: 67200
Number of successful extensions: 236
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)