Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12h20
(865 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC125049-1|AAI25050.1| 401|Homo sapiens keratin associated prot... 31 4.1
BC125048-1|AAI25049.1| 401|Homo sapiens keratin associated prot... 31 4.1
AB076351-1|BAD01538.1| 401|Homo sapiens keratin associated prot... 31 4.1
BC064404-1|AAH64404.1| 719|Homo sapiens nucleolar protein 11 pr... 30 9.5
BC001726-1|AAH01726.2| 408|Homo sapiens NOL11 protein protein. 30 9.5
AY598333-1|AAT06744.1| 719|Homo sapiens L14 protein. 30 9.5
AL110271-1|CAB53709.1| 314|Homo sapiens hypothetical protein pr... 30 9.5
AK023702-1|BAB14647.1| 719|Homo sapiens protein ( Homo sapiens ... 30 9.5
AB076353-1|BAD01540.1| 365|Homo sapiens keratin associated prot... 30 9.5
>BC125049-1|AAI25050.1| 401|Homo sapiens keratin associated protein
10-4 protein.
Length = 401
Score = 31.5 bits (68), Expect = 4.1
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +1
Query: 25 SCSCAPR*PTRRSCKIGFTNTCCPSAPPDS--RR*ACSKTPKRQ*SLIPLPSRAISMRPR 198
S C P C+ G T++C PS S + C+ +P +Q +P+ + + +P
Sbjct: 64 SSPCCPVTCEPSPCQSGCTSSCTPSCCQQSSCQLACCASSPCQQACCVPVCCKTVCCKP- 122
Query: 199 RCCTP 213
CC P
Sbjct: 123 VCCVP 127
>BC125048-1|AAI25049.1| 401|Homo sapiens keratin associated protein
10-4 protein.
Length = 401
Score = 31.5 bits (68), Expect = 4.1
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +1
Query: 25 SCSCAPR*PTRRSCKIGFTNTCCPSAPPDS--RR*ACSKTPKRQ*SLIPLPSRAISMRPR 198
S C P C+ G T++C PS S + C+ +P +Q +P+ + + +P
Sbjct: 64 SSPCCPVTCEPSPCQSGCTSSCTPSCCQQSSCQLACCASSPCQQACCVPVCCKTVCCKP- 122
Query: 199 RCCTP 213
CC P
Sbjct: 123 VCCVP 127
>AB076351-1|BAD01538.1| 401|Homo sapiens keratin associated protein
protein.
Length = 401
Score = 31.5 bits (68), Expect = 4.1
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +1
Query: 25 SCSCAPR*PTRRSCKIGFTNTCCPSAPPDS--RR*ACSKTPKRQ*SLIPLPSRAISMRPR 198
S C P C+ G T++C PS S + C+ +P +Q +P+ + + +P
Sbjct: 64 SSPCCPVTCEPSPCQSGCTSSCTPSCCQQSSCQLACCASSPCQQACCVPVCCKTVCCKP- 122
Query: 199 RCCTP 213
CC P
Sbjct: 123 VCCVP 127
>BC064404-1|AAH64404.1| 719|Homo sapiens nucleolar protein 11
protein.
Length = 719
Score = 30.3 bits (65), Expect = 9.5
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 728 RCTYICIFYPRVCLQRLYNFHILNCWRCP 642
RC FYPR CL +L H+L+ CP
Sbjct: 443 RCKAEPSFYPRNCLMQLIQTHVLSYSLCP 471
>BC001726-1|AAH01726.2| 408|Homo sapiens NOL11 protein protein.
Length = 408
Score = 30.3 bits (65), Expect = 9.5
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 728 RCTYICIFYPRVCLQRLYNFHILNCWRCP 642
RC FYPR CL +L H+L+ CP
Sbjct: 132 RCKAEPSFYPRNCLMQLIQTHVLSYSLCP 160
>AY598333-1|AAT06744.1| 719|Homo sapiens L14 protein.
Length = 719
Score = 30.3 bits (65), Expect = 9.5
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 728 RCTYICIFYPRVCLQRLYNFHILNCWRCP 642
RC FYPR CL +L H+L+ CP
Sbjct: 443 RCKAEPSFYPRNCLMQLIQTHVLSYSLCP 471
>AL110271-1|CAB53709.1| 314|Homo sapiens hypothetical protein
protein.
Length = 314
Score = 30.3 bits (65), Expect = 9.5
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 728 RCTYICIFYPRVCLQRLYNFHILNCWRCP 642
RC FYPR CL +L H+L+ CP
Sbjct: 38 RCKAEPSFYPRNCLMQLIQTHVLSYSLCP 66
>AK023702-1|BAB14647.1| 719|Homo sapiens protein ( Homo sapiens
cDNA FLJ13640 fis, clone PLACE1011221. ).
Length = 719
Score = 30.3 bits (65), Expect = 9.5
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 728 RCTYICIFYPRVCLQRLYNFHILNCWRCP 642
RC FYPR CL +L H+L+ CP
Sbjct: 443 RCKAEPSFYPRNCLMQLIQTHVLSYSLCP 471
>AB076353-1|BAD01540.1| 365|Homo sapiens keratin associated protein
protein.
Length = 365
Score = 30.3 bits (65), Expect = 9.5
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Frame = +1
Query: 25 SCSCAPR*PTRRSCKIGFTNTCCPSAPPDS--RR*ACSKTPKRQ*SLIPLPSRAISMRP- 195
S C P C+ G T++C PS S + C+ +P +Q +P+ + + +P
Sbjct: 64 SSPCCPVTCEPSPCQSGCTSSCTPSCCQQSSCQLACCASSPCQQACCVPVCCKTVCCKPV 123
Query: 196 ---RRCCTPKGICSRSA 237
CC C +S+
Sbjct: 124 CCVSVCCGDSSCCQQSS 140
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,947,348
Number of Sequences: 237096
Number of extensions: 2579455
Number of successful extensions: 7127
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7126
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 11039988564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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